Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E02
         (616 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL135793-9|CAI95134.1| 2948|Homo sapiens transforming, acidic co...    31   4.3  
AL135793-7|CAI95132.1| 2675|Homo sapiens transforming, acidic co...    31   4.3  
AF528099-1|AAO62630.1| 2948|Homo sapiens transforming acidic coi...    31   4.3  
BC098287-1|AAH98287.1|  958|Homo sapiens SLIT and NTRK-like fami...    30   5.6  

>AL135793-9|CAI95134.1| 2948|Homo sapiens transforming, acidic
            coiled-coil containing protein 2 protein.
          Length = 2948

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +2

Query: 14   SDTPTPLPVDLSAESS-SVTSLVNLPLRKTGSATSSDSGHGSCTATSCTRXXXXXXXXXX 190
            SDTPT  P D+  ESS +  S ++ P R+   A       G+C     +R          
Sbjct: 911  SDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVLK 970

Query: 191  XYTLAAQVARLE 226
             ++LA   +R E
Sbjct: 971  DFSLAGNFSRKE 982


>AL135793-7|CAI95132.1| 2675|Homo sapiens transforming, acidic
           coiled-coil containing protein 2 protein.
          Length = 2675

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +2

Query: 14  SDTPTPLPVDLSAESS-SVTSLVNLPLRKTGSATSSDSGHGSCTATSCTRXXXXXXXXXX 190
           SDTPT  P D+  ESS +  S ++ P R+   A       G+C     +R          
Sbjct: 638 SDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVLK 697

Query: 191 XYTLAAQVARLE 226
            ++LA   +R E
Sbjct: 698 DFSLAGNFSRKE 709


>AF528099-1|AAO62630.1| 2948|Homo sapiens transforming acidic coiled
            coil 2, long isoform protein.
          Length = 2948

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +2

Query: 14   SDTPTPLPVDLSAESS-SVTSLVNLPLRKTGSATSSDSGHGSCTATSCTRXXXXXXXXXX 190
            SDTPT  P D+  ESS +  S ++ P R+   A       G+C     +R          
Sbjct: 911  SDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVLK 970

Query: 191  XYTLAAQVARLE 226
             ++LA   +R E
Sbjct: 971  DFSLAGNFSRKE 982


>BC098287-1|AAH98287.1|  958|Homo sapiens SLIT and NTRK-like family,
           member 5 protein.
          Length = 958

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 20  TPTPLPVDLSAESSSVTSLVNLPLRKTGSATSSDSGHGS 136
           TPTP  + + A +S+VT  V L    TG+ TS  +G G+
Sbjct: 622 TPTPSSIQVPARTSAVTPAVRL--NSTGAPTSLGAGGGA 658


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,293,185
Number of Sequences: 237096
Number of extensions: 1103074
Number of successful extensions: 2660
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2660
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)