Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E02
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z54271-5|CAA91035.2|  407|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF292046-1|AAG41142.1|  407|Caenorhabditis elegans polynucleotid...    27   8.1  

>U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical
           protein C44B7.2a protein.
          Length = 597

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 329 KQLIPA--DHHHRRPVHRDNNHKD 264
           K LIPA  D H+RRP   D NH D
Sbjct: 228 KTLIPAKPDDHYRRPYEDDRNHYD 251


>Z54271-5|CAA91035.2|  407|Caenorhabditis elegans Hypothetical
           protein F21D5.5 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  AESSSVTSLVNLPLRKTGSATSSDSG 127
           A+ S  T L   PL+KTGS  S D+G
Sbjct: 12  AKKSKDTDLFGRPLKKTGSWESKDNG 37


>AF292046-1|AAG41142.1|  407|Caenorhabditis elegans polynucleotide
           kinase 3' phosphataseprotein.
          Length = 407

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  AESSSVTSLVNLPLRKTGSATSSDSG 127
           A+ S  T L   PL+KTGS  S D+G
Sbjct: 12  AKKSKDTDLFGRPLKKTGSWESKDNG 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,962,093
Number of Sequences: 27780
Number of extensions: 186419
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)