Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E02
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 409 RVYKIYLMLSDIVYCVP 459
           + Y ++  L+ IVYCVP
Sbjct: 146 KAYCLFSFLNTIVYCVP 162


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 320 SAV*NFEYSKSISIYIGSLF 379
           +A+    Y KSI +Y+G+ F
Sbjct: 272 AALPKISYVKSIDVYLGTCF 291


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 320 SAV*NFEYSKSISIYIGSLF 379
           +A+    Y KSI +Y+G+ F
Sbjct: 272 AALPKISYVKSIDVYLGTCF 291


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 320 SAV*NFEYSKSISIYIGSLF 379
           +A+    Y KSI +Y+G+ F
Sbjct: 211 AALPKISYVKSIDVYLGTCF 230


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 507 TFFYIINYTVFRLNRKGYTIHD 442
           TF Y   YT + +N + +++ D
Sbjct: 227 TFVYDPRYTKYTINDESFSLQD 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,116
Number of Sequences: 438
Number of extensions: 2394
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)