Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D24
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    29   0.33 
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   3.0  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   4.0  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   5.3  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   5.3  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   7.0  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    25   7.0  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +1

Query: 310 IYEAADAALQLSDFYRQVSSPLLAHVNFVYPSDQVNEETTTKHKFRTFYAGSELVVAGRT 489
           I+EA   A  L      V+  + +H+  V+PS  +  +      F +  A SEL     +
Sbjct: 783 IFEAFPIACSLQQIEHWVNEKVASHLMSVFPSKVILRKNQRPSDFASLVAVSELTGVNLS 842

Query: 490 INN-PTELDTQV 522
            ++ P+E+ T++
Sbjct: 843 ASSTPSEIMTEI 854


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 175  TIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLCLL--NDGFSRRI 312
            TI  +L   N    KA    LG     + KF+++LC L  +D + + +
Sbjct: 858  TIASNLNSPNADVMKAAAIALGSLTSQSEKFIKELCALYVSDAYDKEL 905


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 517  ECLALLDYLSYVQQQPVQNQRRKCEI 440
            +C ALL  L + ++  V+NQR K E+
Sbjct: 978  QCAALLSCLVFQEKSEVENQRMKEEL 1003


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 358 QVSSPLLAHVNFVYPSDQVNEETTTKHKFRTFYA 459
           +V S +L  VN  YP  +VN E   KH   T +A
Sbjct: 368 RVISAVLTGVNRAYPFAEVNSEKFDKH-MNTLFA 400


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 204 IFFCEMFNDSFSTRYTDSWIAVCQEYDN 121
           I++  MFN  F  +   +W+A   +YD+
Sbjct: 909 IYYLRMFNLPFHVKQLYTWLAPISKYDS 936


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 156 DSWIAVCQEYDNRFQGFD 103
           + WI V Q+YD+ F+  D
Sbjct: 609 EGWIKVKQDYDDEFESLD 626


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 344 VTFTDKCPHLCSLTSTLFIRLIR*TKKRLLSTNFA 448
           +TF D  P LCS+   + +  I   K RL   +FA
Sbjct: 56  ITFIDWIPFLCSILGIVIVNSI--DKSRLSGDSFA 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,114
Number of Sequences: 5004
Number of extensions: 39724
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)