Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D24
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    30   0.90 
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    29   2.1  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   8.4  
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    27   8.4  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   8.4  

>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 483 SSNNQFRTSVESAKFVLSSRFFVHLIRRINKVDVSEQR*GHLSVKVT 343
           S NN F + + SA   L +R  VH    +N + +++++   LSVK++
Sbjct: 90  SLNNNFYSEISSALDYLHTRNIVHGFLHLNSIYITDRKNQKLSVKLS 136


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
           protein Y54E10A.11 protein.
          Length = 1446

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +1

Query: 136 TDGDPTVGVTSTKTIIKHLTE----KNKGENKATMFCLGLGDDVNNKFLRKL-CLLNDGF 300
           TDG PTV + + K I + LT+     +KG  K   F L    DV N        ++ DGF
Sbjct: 107 TDGSPTVRMLTMKVISQFLTKLKKSASKGLKKIIPFVLFAKSDVTNGVAAAASAVIRDGF 166


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 240  TEAEHSSFVLSFIFFCEMFNDSFSTRYTDSWIAVCQEYDNRFQGFDFF 97
            T  EH+    +++FF +   +   T YT     V ++YDNR   +DFF
Sbjct: 5019 TTKEHN--FANYLFFLQHLVNKDETEYTGQETYVREKYDNR--DWDFF 5062


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical protein
            T04G9.1 protein.
          Length = 1610

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 304  RRIYEAADAALQLSDFYRQVSSPLLAHVNFVYPSDQVNEETTTKHKFRT 450
            R +Y+  D+ LQ    Y QVS P    +       ++ + T+ K KFR+
Sbjct: 1023 RTMYDNLDSKLQNHVRYGQVSLPKTFELKLKSIEQRLGQWTSVKEKFRS 1071


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 240  TEAEHSSFVLSFIFFCEMFNDSFSTRYTDSWIAVCQEYDNRFQGFDFF 97
            T  EH+    +++FF +   +   T YT     V ++YDNR   +DFF
Sbjct: 5011 TTKEHN--FANYLFFLQHLVNKDETEYTGQETYVREKYDNR--DWDFF 5054


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,237,048
Number of Sequences: 27780
Number of extensions: 222379
Number of successful extensions: 503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)