Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_D23
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 289 2e-79
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 288 3e-79
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 288 3e-79
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 139 3e-34
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 127 9e-31
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 81 1e-16
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 6e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 36 0.004
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.028
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.20
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 30 0.26
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.34
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.46
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.1
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.4
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.4
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 26 4.2
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 4.2
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 4.2
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 5.6
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 5.6
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 7.4
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 7.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 7.4
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 9.8
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 9.8
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 9.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 289 bits (708), Expect = 2e-79
Identities = 133/179 (74%), Positives = 155/179 (86%)
Frame = +2
Query: 2 IALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 181
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTR 134
Query: 182 EHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPIS 361
EHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+S
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVS 192
Query: 362 GWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDV 538
G+ GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDV
Sbjct: 193 GFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDV 251
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 288 bits (707), Expect = 3e-79
Identities = 132/179 (73%), Positives = 155/179 (86%)
Frame = +2
Query: 2 IALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 181
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTR 134
Query: 182 EHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPIS 361
EHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+S
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVS 192
Query: 362 GWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDV 538
G+ GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDV
Sbjct: 193 GFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDV 251
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 288 bits (707), Expect = 3e-79
Identities = 132/179 (73%), Positives = 155/179 (86%)
Frame = +2
Query: 2 IALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 181
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTR 134
Query: 182 EHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPIS 361
EHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+S
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVS 192
Query: 362 GWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDV 538
G+ GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDV
Sbjct: 193 GFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDV 251
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 139 bits (336), Expect = 3e-34
Identities = 81/187 (43%), Positives = 107/187 (57%), Gaps = 3/187 (1%)
Frame = +2
Query: 2 IALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 181
+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTR
Sbjct: 245 VASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTR 304
Query: 182 EHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY-IKKIGYNPAAVAFVPI 358
EHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+ + V FVPI
Sbjct: 305 EHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPI 362
Query: 359 SGWHGDNML--EPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQ 532
S G N++ + S W+K G L+ ALD ++PP +P K LRL +
Sbjct: 363 SAISGTNLIQKDSSDLYKWYK------------GPTLLSALDQLVPPEKPYRKPLRLSID 410
Query: 533 DVLXNRR 553
DV + R
Sbjct: 411 DVYRSPR 417
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 127 bits (307), Expect = 9e-31
Identities = 59/138 (42%), Positives = 92/138 (66%), Gaps = 4/138 (2%)
Frame = +2
Query: 17 FETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 196
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 197 AFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWH 370
A T G+ L+V +NKMD +SE R++E ++S +++++ GYN V ++P+S +
Sbjct: 371 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYT 430
Query: 371 GDNMLE--PSTKMPWFKG 418
G N+ + S+ PW++G
Sbjct: 431 GQNVKDRVDSSVCPWYQG 448
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 80.6 bits (190), Expect = 1e-16
Identities = 41/99 (41%), Positives = 61/99 (61%)
Frame = +2
Query: 14 KFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 193
++ET + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 194 LAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY 310
LA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 163 LARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.9 bits (94), Expect = 6e-05
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +2
Query: 35 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 214
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 215 KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 313
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.9 bits (79), Expect = 0.004
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 17 FETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 142
F+ G ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.1 bits (72), Expect = 0.028
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 32 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 187
Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 145 YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.20
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 32 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 142
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.9 bits (64), Expect = 0.26
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 8 LWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 142
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.34
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 44 IIDAPGHRDFIKNMITGTSQADCAVLIV 127
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.46
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 38 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 217
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 218 QLIVGVNKMD 247
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 32 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 127
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 32 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 127
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 47 IDAPGHRDFIKNMITGTSQADCAVLIV 127
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 249 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 350
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 118 HGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELP 11
+ AV DH L + ++ + D ++FAG+++P
Sbjct: 28 NAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVP 63
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 294 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKE 443
R+S S + + LPS PF++ + + ++P G + KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 242 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 412
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 251 TEPPYSESRFEEIKKEVSSYIKK 319
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 148 EFTSTSGDNKHGAVSLRRSSDHVLDE 71
+F S+ + K+G + SSD VLDE
Sbjct: 1234 DFVSSKRNGKNGGSFIEESSDTVLDE 1259
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 121 KHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELPE 8
K G V + + V+DE ++ ++D+G + AG ++ E
Sbjct: 236 KRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFE 273
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 293 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 418
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 306 EETSFLISSNRDSLYGGSVESILFTPTISCLTPSVKASRACSRVCPFFEIPAS-NSPVPA 130
E + + ISSN S S FT + S TP++ S + V + +S +SP+ +
Sbjct: 757 ETSGYTISSN-SSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISS 815
Query: 129 ATISTAQS 106
+++++ S
Sbjct: 816 NSVTSSTS 823
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 419 WLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 526
+L+ + K G E++DA+LP + +L +P
Sbjct: 628 YLLSSENAKDTGDIKSESIDAVLPTLETSSPSLSIP 663
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 38 VTIIDAPGHRDFIKN 82
+T+ID PG DFI N
Sbjct: 89 LTVIDTPGFGDFINN 103
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 24.6 bits (51), Expect = 9.8
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -1
Query: 538 YVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 374
++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1523 WLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,935
Number of Sequences: 5004
Number of extensions: 52002
Number of successful extensions: 240
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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