Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D22
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   2.6  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.9  
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    25   7.9  

>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 178 SHRSA*RRKDPGVAREGGGMGHAEY*RDLPLPGQ 279
           S +SA      GV + GGG+ H  + RDL L G+
Sbjct: 99  SQKSAYGYLQVGVEKYGGGIWHTWFDRDLSLAGR 132


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 236 WDTQNIKEIFPYQD 277
           WD +N++E+F YQD
Sbjct: 28  WDYENMQEVFGYQD 41


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 162 YTRALFSPQRITSQRPRSCARGRGN 236
           Y++A + P R TSQRP S   G  +
Sbjct: 67  YSQAPYPPARPTSQRPNSWQPGNAS 91


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 5   PEGVGFKTTGERDGETKFGEFPWMV 79
           PE +G KT+GE  G       P MV
Sbjct: 273 PESLGIKTSGEESGAINADHGPPMV 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,040
Number of Sequences: 5004
Number of extensions: 42324
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)