Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_D21
(268 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 30 0.048
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 0.34
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 27 0.34
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 26 1.0
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 26 1.0
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 1.4
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 25 1.8
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 24 4.1
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 24 4.1
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 24 4.1
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 23 7.2
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 23 7.2
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 23 7.2
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 23 9.6
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 9.6
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 23 9.6
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 23 9.6
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 30.3 bits (65), Expect = 0.048
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 89 HSEKFPELSRLGAYHPTLVYTKRDIEIVVKHAAKRGVRVLPEFDVPRHTSSWGVAF 256
H EKF L Y K + +I++++ +RG VLP+ PR G F
Sbjct: 193 HGEKFGNKQLLAIASK---YNKSEAQIMIRYCLQRGFIVLPKSSTPRRIKENGDVF 245
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 27.5 bits (58), Expect = 0.34
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 152 WCTLMLDDKLRVDLVRETFHCDKENSDHRRYANGVRSFYSRPWHRYSL 9
W T +++ KLR +++RE F H R G R F+SR HR S+
Sbjct: 471 WGTTLINRKLREEVLREVF-----APKHARRRLGTR-FHSRSSHRPSV 512
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 27.5 bits (58), Expect = 0.34
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 11 KNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLG 124
K +D + + VL WH + +Q + + + ELS LG
Sbjct: 111 KLLDFLQVQEKGVLAWHFIPNQEYNCYVKNKTELSFLG 148
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 1.0
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = -1
Query: 106 GKLFTVIRKTLIIDDMPMEYVHFIR 32
G ++ ++KT+IIDD ++Y+ ++
Sbjct: 164 GTMYAFLKKTVIIDDSYLQYLSTVK 188
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 1.0
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +2
Query: 56 WHIVDDQSFPYHSEKFPELSRLGAYHPTLVYTKRDI--EIVVKHAAKRGVRVLPEFDVPR 229
W + S+PY+ +KF YH VY DI + + + +LP +
Sbjct: 118 WFMPVFHSYPYNIQKFDAARYFILYHYGGVYMDLDIGCKKPMDPLLSKATFILPSTEPIG 177
Query: 230 HTSSWGVAFP 259
+++ W A P
Sbjct: 178 YSNDWFAATP 187
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 143 LMLDDKLRVDLVRETFHCDKENSD 72
L +DD+ R D V ETFH D+E D
Sbjct: 357 LKIDDEQR-DYVMETFHEDEELED 379
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 1.8
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = -3
Query: 266 GCWGKLLPMNSCDVVHQTLVRLEPLS*RRVSLQSLYRVWCTLMLDDKLRVD---LVRETF 96
GCWGK+ MN D PL + + ++ CT +D L+ D + R F
Sbjct: 13 GCWGKIANMNHLDSCF-------PLR-YIIGRKKASKLLCT--MDSGLKSDSHEVERSNF 62
Query: 95 HCDKENSDHRRYANGVRSFY 36
+K +RYA + SFY
Sbjct: 63 QLNKPEKSLKRYA--LLSFY 80
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 23.8 bits (49), Expect = 4.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 91 VIRKTLIIDDMPMEYVHFIRGHGID 17
V +TL +D+ EY+ F RGH D
Sbjct: 807 VASETLNFNDLKGEYLVFRRGHAPD 831
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 23.8 bits (49), Expect = 4.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 5 ILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSR 118
I + I+ A + L + PY+S KFP ++R
Sbjct: 377 IRRTIEQNATERSEDLLLKFCKETIVPYYSSKFPRITR 414
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 23.8 bits (49), Expect = 4.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 53 HWHIVDDQSFPYHSEKFPELSR 118
H H +DD FPY + E SR
Sbjct: 407 HRHDIDDADFPYKHLRKGEYSR 428
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 23.0 bits (47), Expect = 7.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 107 RETFHCDKENSDHRRYANGVRSFYSR 30
RET C KENS Y + V+SF R
Sbjct: 742 RETIICQKENS---FYIDTVKSFRDR 764
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 23.0 bits (47), Expect = 7.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 167 IVVKHAAKRGVRVLPEFDVPRHTSSWGVAF 256
I + +A+K + FD+P S W V++
Sbjct: 319 ITLVNASKATPDIFKYFDLPTTASGWNVSY 348
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 23.0 bits (47), Expect = 7.2
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +2
Query: 20 DAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAYHPTLVYTK 154
D + + + H+H+ S PY +K R+ HPT K
Sbjct: 85 DLSTVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCK 129
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 22.6 bits (46), Expect = 9.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 149 TKRDIEIVVKHAAKRGVRVLPEFDVP 226
T ++ E +V+HA R + L + D+P
Sbjct: 92 TLKEPESIVRHAFGRVIAALAKLDLP 117
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 22.6 bits (46), Expect = 9.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 206 LPEFDVPRHTSSWGVAFP 259
L D+P H S VAFP
Sbjct: 65 LSHLDIPEHRMSNAVAFP 82
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 22.6 bits (46), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 254 KLLPMNSCDVVHQTLVRLEPLS*RRVSLQ 168
KLLP N +H+T+ + +RV+LQ
Sbjct: 67 KLLPQNYNFEIHKTIWHIRLRKAKRVALQ 95
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 22.6 bits (46), Expect = 9.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 85 RKTLIIDDMPMEYVHFIRGHG 23
+ +I + EY +FIR HG
Sbjct: 182 KNRIITSTLASEYAYFIRPHG 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,162,612
Number of Sequences: 5004
Number of extensions: 21774
Number of successful extensions: 51
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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