Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_D21
(268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1000 - 23220878-23221821,23222164-23223001 105 6e-24
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 92 6e-20
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 91 1e-19
03_02_0187 - 6248226-6249226,6249296-6250148 88 1e-18
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 33 0.024
12_01_0153 - 1172080-1172450,1172493-1172592,1173777-1174691 28 0.89
11_01_0156 - 1290361-1290876,1291095-1291201,1292027-1292105,129... 28 0.89
05_04_0004 + 17059087-17059143,17059182-17059868 28 0.89
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 27 2.1
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 26 3.6
01_06_0216 + 27618116-27618548,27618960-27619042,27619169-276192... 25 6.3
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 105 bits (251), Expect = 6e-24
Identities = 46/88 (52%), Positives = 59/88 (67%)
Frame = +2
Query: 5 ILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAYHPTLVYTKRDIEIVVKHA 184
IL+ IDAMAANKMNV HWHI D QSFP P L+ G+Y + YT D++++V A
Sbjct: 206 ILRTIDAMAANKMNVFHWHITDSQSFPLELPSEPALAEKGSYGDGMRYTVDDVKLIVDFA 265
Query: 185 AKRGVRVLPEFDVPRHTSSWGVAFPSIL 268
RGVRV+PE D P HT+SW A+P ++
Sbjct: 266 MNRGVRVVPEIDTPGHTASWAGAYPELV 293
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 91.9 bits (218), Expect = 6e-20
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +2
Query: 17 IDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAYHPTLVYTKRDIEIVVKHAAKRG 196
ID+M +K+NVLHWHIVD+QSFP +P+L GAY + YT D +V++A +RG
Sbjct: 195 IDSMTYSKLNVLHWHIVDEQSFPIEIPSYPKLWN-GAYSYSERYTMDDAIDIVQYAERRG 253
Query: 197 VRVLPEFDVPRHTSSWGVAFPSI 265
V VL E DVP H SWGV +PS+
Sbjct: 254 VNVLAEIDVPGHALSWGVGYPSL 276
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 91.1 bits (216), Expect = 1e-19
Identities = 44/87 (50%), Positives = 56/87 (64%)
Frame = +2
Query: 5 ILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAYHPTLVYTKRDIEIVVKHA 184
I K ID MA +K+NVLHWHIVD QSFP +P+L G+Y + YT D +V++A
Sbjct: 184 IKKVIDTMAYSKLNVLHWHIVDAQSFPIEIPSYPKLWN-GSYSFSERYTTSDAVDIVRYA 242
Query: 185 AKRGVRVLPEFDVPRHTSSWGVAFPSI 265
RGV V+ E DVP H SWGV +PS+
Sbjct: 243 ENRGVNVMAEIDVPGHALSWGVGYPSL 269
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 87.8 bits (208), Expect = 1e-18
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 12/100 (12%)
Frame = +2
Query: 5 ILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAYHPTLVYTKRDIEIVVKHA 184
IL + AMA NK+NV HWHI D QSFP P L+ G+Y PT+ YT+ D+ +V A
Sbjct: 211 ILHTLRAMAFNKLNVFHWHITDAQSFPIVLPTVPNLANSGSYSPTMRYTENDVRHIVSFA 270
Query: 185 AKRGVRVLPEFDVP------------RHTSSWGVAFPSIL 268
A G+RV+PE D+P HT SW A+P I+
Sbjct: 271 ASFGIRVIPEIDMPVYSRLSVARFGSGHTGSWAGAYPEIV 310
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 33.5 bits (73), Expect = 0.024
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 194 GVRVLPEFDVPRHTSSWGVAFPSI 265
G+ V+ E DVP H SWG +P +
Sbjct: 261 GIHVMAEIDVPGHAESWGKGYPKL 284
>12_01_0153 - 1172080-1172450,1172493-1172592,1173777-1174691
Length = 461
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 110 LSRLGAYHPTLVYTKRDIEIVVKHAAKRGVRVLPEFD 220
LS G YHP + ++D+ KH AK V FD
Sbjct: 253 LSDFGRYHPRVASLEKDVIAPYKHMAKTFVNDSAGFD 289
>11_01_0156 -
1290361-1290876,1291095-1291201,1292027-1292105,
1292609-1293523
Length = 538
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 110 LSRLGAYHPTLVYTKRDIEIVVKHAAKRGVRVLPEFD 220
LS G YHP + ++D+ KH AK V FD
Sbjct: 253 LSDFGRYHPRVASLEKDVIAPYKHMAKTFVNDSAGFD 289
>05_04_0004 + 17059087-17059143,17059182-17059868
Length = 247
Score = 28.3 bits (60), Expect = 0.89
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 83 PYHSEKFPELSRLGAYHPTLVY--TKRDIEIVVKHAAKRGVRVLPEFDVPRHTSSWG 247
PY E RL A P LV T D EI+ H A R V+ + + R T+ WG
Sbjct: 84 PYLRAALKEALRLHAPLPLLVARETVADTEIMGYHVAARTRVVINGWAIGRDTAVWG 140
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 98 KFPELSRLGAYHPTLVYTKRDIEIVVKHAAKRGVRVLPEF 217
KF EL++ HP +++ D++ V ++K GV+ +P F
Sbjct: 55 KFEELAQT---HPEILFLYVDVDDVQSVSSKLGVKAMPTF 91
>05_01_0460 -
3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 77 SFPYHSEKFPELSRLGAYH-PTLVYTKRD 160
+FP+ P RLG YH P ++Y K D
Sbjct: 326 AFPHLYNNRPRKVRLGVYHTPMIMYIKTD 354
>01_06_0216 +
27618116-27618548,27618960-27619042,27619169-27619225,
27619255-27619407,27619777-27619872,27620103-27620183,
27620184-27620254,27620343-27620385,27620502-27620582,
27620684-27620743,27621018-27621083,27621358-27621455,
27621794-27621842,27621933-27621977,27622845-27623369
Length = 646
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 47 VLHWHIVDDQSFPYHSEKFPELSR 118
V +WH++DD+ P ++ E +R
Sbjct: 544 VYNWHVIDDEPLPRNTRSSSEDTR 567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,217,734
Number of Sequences: 37544
Number of extensions: 126769
Number of successful extensions: 290
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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