Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D21
         (268 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    26   0.070
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   3.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   4.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    20   6.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    20   6.1  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 26.2 bits (55), Expect = 0.070
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 100 LFTVIRKTLIIDDMPMEYVHFIRGH 26
           LFT + +  I + MPME +  +R H
Sbjct: 322 LFTTVHRICIGETMPMELIENLRNH 346


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -3

Query: 266 GCWGKLLP 243
           GCW  LLP
Sbjct: 339 GCWNSLLP 346


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -3

Query: 119 VDLVRETFHCDKENSD 72
           +D + +  HC+ EN++
Sbjct: 301 IDFLFQVLHCNMENTE 316


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 77  SFPYHSEKFPEL 112
           ++ YH EKF +L
Sbjct: 7   NYSYHDEKFKQL 18


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 77  SFPYHSEKFPEL 112
           ++ YH EKF +L
Sbjct: 7   NYSYHDEKFKQL 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,042
Number of Sequences: 438
Number of extensions: 1263
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)