Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_D16
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 145 3e-36
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 27 2.3
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 27 2.3
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 26 4.1
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 25 7.1
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.4
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.4
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 9.4
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 25 9.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 9.4
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 25 9.4
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.4
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 145 bits (352), Expect = 3e-36
Identities = 80/188 (42%), Positives = 109/188 (57%), Gaps = 21/188 (11%)
Frame = +3
Query: 33 TNMDFKPKEHQHVRYNPLKDEWILVSPHRCLRPWSGQTEQAPEDQAP--DPNNPLRAGAT 206
T+ F E+ H RYNPL D ++L SPHR RPW G E+ +D DP L G
Sbjct: 2 TSKKFDFTEYSHRRYNPLTDSYVLCSPHRAKRPWQGAKEEIKKDDTVKYDPTCYLCPGNI 61
Query: 207 RSNGQRNPNYESTYVFPNDFPALLERVPGP---------PEGDNL---LFQSGPAKGTCR 350
R+ G NP YE+TYVFPND+PA+ RV P +G+ L +F++ KG C
Sbjct: 62 RATGFENPKYETTYVFPNDYPAV--RVDQPDYMQDESEITKGNTLKTRMFKTEGVKGKCF 119
Query: 351 VMCFHPDSSMTLPLMTVDEILAVIEEWINQMKELGR-------KYTWVQIFENQGAIMGC 509
V+CF P+ ++TLPLM+ + I V+E W + L + +Y ++QIFEN+G+ MGC
Sbjct: 120 VICFCPNHNLTLPLMSAEAICNVVETWKHLYVTLKKESLEGPIRYKYLQIFENKGSAMGC 179
Query: 510 SNPHPHCQ 533
SNPHPH Q
Sbjct: 180 SNPHPHGQ 187
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 369 DSSMTLPLMTVDEILAVIEEWINQMKELGRKYTWVQIFENQGAIMG 506
DS T+ +M +DE + EW+N + V +FE I+G
Sbjct: 92 DSLDTMMIMGLDEQVLRAREWVNNSLTWNQDDEEVSVFETTIRILG 137
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 165 QAPDPNNPLRAGAT 206
QAP P+NPL AGAT
Sbjct: 210 QAPFPSNPLSAGAT 223
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 147 EQAPEDQAPDPNNPLRAGATRSNGQRNPNYES 242
+ APE QAP P P A A + + + + ++
Sbjct: 13 KHAPEQQAPPPQQPAHAAAPAQDDEPDDDIDA 44
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 366 PDSSMTLPLMTVDEILAVIEEW 431
P S+T+P+ T +IL +EW
Sbjct: 520 PSPSLTIPMATEPQILEYHQEW 541
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 468 MCIFYRVLSFGLSILQ*PPGFRRQSSVVRSW 376
M I++ VLS G I GF QSS+ W
Sbjct: 169 MVIYFTVLSIGPGIAPIISGFISQSSIGWQW 199
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 9.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 231 NYESTYVFPNDFPALLERVPGPPEGDNLLFQSGPAKGTCRVMCFHPDSSMTLP 389
NY+ST PA+ +P P G ++ S PA T R + P S ++ P
Sbjct: 470 NYDSTV------PAVYPYMPPPFSGSDMNVMSNPAADTLR--SYSPASQVSTP 514
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +3
Query: 255 PNDFPALLERVPGPPEGDNLLFQSGPAKGTCRVMCF 362
P D L+ + GPP + +++ K V+CF
Sbjct: 222 PADITDLVSKYAGPPGNNVVIYYMNSTKSYSVVVCF 257
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 147 EQAPEDQAPDPNNPLRAGAT 206
EQAPE+ DP NP + A+
Sbjct: 289 EQAPENPFRDPENPFKDPAS 308
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 189 MGY*GPELGLRELVPSARSTVEGIGAVTPESIHLSA 82
+GY P L R+ P +S + + P S H SA
Sbjct: 77 LGYFDPSLSERKQSPPGKSLHRFVDNLNPNSSHFSA 112
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 468 MCIFYRVLSFGLSILQ*PPGFRRQSSVVRSW 376
M I++ VLS G I GF QSS+ W
Sbjct: 169 MVIYFTVLSIGPGIAPIISGFISQSSIGWQW 199
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 468 MCIFYRVLSFGLSILQ*PPGFRRQSSVVRSW 376
M I++ VLS G I GF QSS+ W
Sbjct: 169 MVIYFTVLSIGPGIAPIISGFISQSSIGWQW 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,906
Number of Sequences: 5004
Number of extensions: 51372
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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