Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D14
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical ...    28   3.5  
U53154-1|AAC25854.1|  382|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical
           protein R08A2.4 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 476 NLRMCQISSKPLQSFENYCRTNDQTYTVVKYIRKITNSSKSMQPCTDTR 330
           NL +C I  K  QS    CR  +  Y + +  RK+T   K+    T+ R
Sbjct: 51  NLLICDIELKECQSIGVICRKTEDGYFLHRRNRKLTKLIKTQDFYTEFR 99


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 5   SRVXXXXXXYRSQFISDCHRMKIIYRISKIYMFFY 109
           S++      + S F      +KI +RIS+I+ FFY
Sbjct: 607 SKIASFFFEFFSDFCDSYSCLKIFFRISRIFTFFY 641


>AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical
           protein T05A8.2 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 427 FSNDCNGFDEIWHIRKFYEGNVPR 498
           FSND +  DE+  I  +  GNVPR
Sbjct: 178 FSNDSSSTDEVRVIANYVAGNVPR 201


>U53154-1|AAC25854.1|  382|Caenorhabditis elegans Hypothetical
           protein C33G8.7 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -3

Query: 464 CQISSKPLQSFENYCRTNDQTYTVVKYIRKITNSSKSMQPCTDTRTTQFY 315
           C++S   L++     R ND+ +T ++  R +T   K +   +  +   FY
Sbjct: 119 CRLSVSGLETTSIPLRNNDRIFTALENYRWLTKERKIVHKTSPAKKVNFY 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,268,208
Number of Sequences: 27780
Number of extensions: 187539
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)