Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D13
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...   102   2e-22
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    95   3e-20
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445...    28   5.4  
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    27   7.1  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score =  102 bits (244), Expect = 2e-22
 Identities = 54/135 (40%), Positives = 78/135 (57%)
 Frame = +2

Query: 11  MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 190
           MPF R+VE GRVALV+ G   G+LV +VD++DQ RAL+D P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58

Query: 191 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQITDYDRFQLTSARVKRN 370
           ++          + KA  +A +  KW  S W +KL  +++RA + D+DRF++  A++KR 
Sbjct: 59  KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118

Query: 371 RARTAVFKSLKVKAA 415
            A       LK  AA
Sbjct: 119 GAIRQELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 47/117 (40%), Positives = 71/117 (60%)
 Frame = +2

Query: 14  PFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFR 193
           PF R+VE GRVALV+ G   G+LV +VD++DQ RAL+D P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 194 LKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQITDYDRFQLTSARVK 364
           +          + KA  +A +  KW  S W +KL  +++RA + D+DRF++  A++K
Sbjct: 73  IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>12_01_0551 +
           4446937-4447353,4449141-4450013,4451206-4451244,
           4452339-4452581
          Length = 523

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 243 VHAFLTTRVGAVKGYFRRNFVKWSWLRR 160
           +H   T+R+G  + +FR   V + WLRR
Sbjct: 351 LHCTSTSRLGIFEAWFRPLLVDFGWLRR 378


>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 35   PGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS 139
            P  VA  +DG L   ++G V  ID    L D PG+
Sbjct: 1159 PSTVAESTDGDLDNDMLGTVKSIDWNDELNDDPGA 1193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,014
Number of Sequences: 37544
Number of extensions: 258686
Number of successful extensions: 698
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)