Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D11
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    30   0.88 
AC024761-13|AAP13758.1|  353|Caenorhabditis elegans Peroxiredoxi...    30   1.2  
AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxi...    30   1.2  
Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF098996-3|AAC68707.2|  349|Caenorhabditis elegans Serpentine re...    27   8.2  

>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 400 PTSSSHYHPHIFKQYHLPLIQALQ 471
           P   S+  P IFKQYHLP ++ L+
Sbjct: 645 PLKISNQKPDIFKQYHLPTMKELE 668


>AC024761-13|AAP13758.1|  353|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform c protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 332 LEYVDTEYSLWLTWFLTPVIVTFLLP 409
           ++Y+D +Y  +L W L P  + F+ P
Sbjct: 34  VDYIDLDYLEYLLWLLLPFFILFIFP 59


>AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform a protein.
          Length = 387

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 332 LEYVDTEYSLWLTWFLTPVIVTFLLP 409
           ++Y+D +Y  +L W L P  + F+ P
Sbjct: 34  VDYIDLDYLEYLLWLLLPFFILFIFP 59


>Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical
           protein T13F2.5 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = +2

Query: 134 VHFVTFIIYFNNNDINSRAMVKTECSVRPVKAYIMSDLLKRFD-YETTNDFVQIAISIAG 310
           ++ + F+I   N   NS+  V+ + S R    Y +S+  +  +  +T   F +  ISI  
Sbjct: 192 INLLAFVICLLNERYNSKKFVQKKFSTRKSVTYSLSERYQIVENLKTAYLFKRGIISIIL 251

Query: 311 FYV--GLFYLEYVDTEYSLWLTWFL 379
           F V  G+F +     E+   + W L
Sbjct: 252 FSVICGVFLIRMSSDEHDSSMNWIL 276


>Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical
           protein F28D1.1 protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 307 RFLRWTFLFGICGHRVQFVADLVPDAGHRDLPTSSSH 417
           RF+ W  + GI GH   F + LVP AG  ++ T  S+
Sbjct: 423 RFVPWEDVLGI-GHAGGFTSMLVPGAGDPNVDTLRSN 458


>AF098996-3|AAC68707.2|  349|Caenorhabditis elegans Serpentine
           receptor, class w protein79 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 290 IAISIAGFYVGLFYLEYVDTEYSLWLTW 373
           I+ +++G+Y G +YLE    + +LW+ W
Sbjct: 151 ISAALSGWYYGRYYLE---KDQNLWIMW 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,753,817
Number of Sequences: 27780
Number of extensions: 212387
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)