Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D10
         (297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine re...    27   2.4  
Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping ...    25   7.4  

>AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine
           receptor, class t protein69 protein.
          Length = 295

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 89  FFYALQGSCVRTVKWSPPW 33
           FF  + GS  + +K+SPPW
Sbjct: 129 FFVIVSGSITQNMKFSPPW 147


>Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical
           protein C03D6.3b protein.
          Length = 573

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 71  GSCVRTVKWSPPWHRIMHSLL 9
           G C + +KW PP H  +  LL
Sbjct: 458 GRCDKVLKWKPPSHNSVDFLL 478


>Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical
           protein C03D6.3a protein.
          Length = 623

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 71  GSCVRTVKWSPPWHRIMHSLL 9
           G C + +KW PP H  +  LL
Sbjct: 470 GRCDKVLKWKPPSHNSVDFLL 490


>AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping
           enzyme protein.
          Length = 573

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 71  GSCVRTVKWSPPWHRIMHSLL 9
           G C + +KW PP H  +  LL
Sbjct: 458 GRCDKVLKWKPPSHNSVDFLL 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,388,992
Number of Sequences: 27780
Number of extensions: 84202
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)