Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D08
         (80 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   4.1  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    19   5.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    19   5.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    19   7.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 12  HLCAALPVHRISGD 53
           H C A P H  S D
Sbjct: 277 HSCEACPAHSKSSD 290


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 13 ICAPRCRC 36
          ICAP C C
Sbjct: 66 ICAPGCVC 73


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 13 ICAPRCRC 36
          ICAP C C
Sbjct: 66 ICAPGCVC 73


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
          protein-1 protein.
          Length = 128

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -2

Query: 31 GSAAHKCNY 5
          G + HKC Y
Sbjct: 40 GDSCHKCKY 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,004
Number of Sequences: 438
Number of extensions: 159
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 8
effective length of database: 142,839
effective search space used:  2571102
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)