Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D06
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    25   4.6  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   4.6  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   8.1  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.1  

>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 128 AALYTCTHKYAHTHTIHKYTSI*ILHYTVSKTIFLSTGTRGN 3
           A LY+  H +     +HKY +I +  Y  S  I L   T+ N
Sbjct: 266 AGLYSIQHNFPLLKQVHKY-AIEVAEYAESLGIELEVPTQSN 306


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 357 YICS*IIGLVKKIESQKSHHTITV 286
           Y+C  ++G +  ++    H+TITV
Sbjct: 430 YLCLNLVGFIWTVQQDAEHNTITV 453


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/51 (17%), Positives = 23/51 (45%)
 Frame = +1

Query: 97  AYLCVHVYSAARRSSNVFFILSQQNDYTSGAQSLLISDHFDCFVESRDHDK 249
           +Y  + +      +S + F++S + +Y+      +  +H+    E   H+K
Sbjct: 109 SYPAIQLVENEETTSGISFVISDEENYSLEEIIAMTMEHYISLAEEMAHEK 159


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 311 KNHITQSQFLIRFHF*YCHIFLSWSLLSTKQSKW 210
           K H+  SQ +I+ +  +   +L W++  TK ++W
Sbjct: 101 KRHVGSSQVVIKIYSPHIKDYLPWTISCTK-NEW 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,134
Number of Sequences: 5004
Number of extensions: 42481
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)