Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D06
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0533 - 9263910-9264211,9264564-9264706,9265134-9265219           30   0.87 
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250...    28   3.5  

>03_02_0533 - 9263910-9264211,9264564-9264706,9265134-9265219
          Length = 176

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 181 WCSHFAEIE*K-RRCSTCEPHYTRAHTNMHTH 89
           W  +F++ E   R CS C PH    H+++H H
Sbjct: 24  WSYYFSKQEIMGRTCSMCRPHACTIHSHLHHH 55


>03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,
            2500125-2500259,2500763-2500840,2500994-2501044,
            2501805-2501879,2501975-2502037,2503048-2503137,
            2503215-2503406,2503498-2503591,2503776-2504279,
            2504415-2504614,2504712-2504756,2505023-2505082,
            2505476-2505520,2505858-2505941,2506121-2506318,
            2506960-2507667
          Length = 974

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 342  IIGLVKKIESQKSHHTITVFNKISFLILSH 253
            I+G V +IE  K  + +  FN   FL+L H
Sbjct: 944  IVGPVDEIELSKDVNIVCTFNSFLFLVLDH 973


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,835,125
Number of Sequences: 37544
Number of extensions: 223102
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)