Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D06
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine rece...    31   0.34 
U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z22174-4|CAA80129.2|  361|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    27   9.7  

>U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein201 protein.
          Length = 351

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +2

Query: 206 VTTLIALLKAGTTIKKCDNIKNEILLKTVIV*CDF*DSIFFTSPIIYEQI*LVKSYFDSR 385
           V+  I  LK  T  +K  N++ ++L+  VI    F    FF  P++Y  + ++K Y++  
Sbjct: 227 VSNSIQQLKQKTMSQKTYNMQKKLLIALVIQ--SFVPMTFFMFPLVYGMVVVIKEYYNQA 284

Query: 386 V 388
           +
Sbjct: 285 I 285


>U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical
           protein ZK470.1 protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = -2

Query: 463 MYILVNSINECLELSK*--PYNRAVQWYTRVKIRFHQLYLLIDYRTCEEDRISKITSHNH 290
           +++ V SI E   LS     Y R + W+   K+RF   + L+ YR     +I KIT+ N 
Sbjct: 126 IFMTVGSIYEGKSLSAAFAEYRRKM-WHIW-KVRFLIKFFLLLYRKIGRKKIGKITTMNF 183

Query: 289 SF**DFIFNIVTFFYRGPCFQQSNQSGH*SIKIGPH-WCSHFAEIE 155
           +    F  N    F         +QS   +   GPH + +H  +I+
Sbjct: 184 TNITSFDGNETEVFDTSWSLSTPSQSTEEAFTTGPHNYYNHHDQID 229


>Z22174-4|CAA80129.2|  361|Caenorhabditis elegans Hypothetical
           protein K01B6.2 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 76  LCIVCVCAYLCVHVYSAARRSSNVFFILSQQNDYTSGAQSLLI 204
           LC++C    +  H+  +  R  +++F  S QN +T    + LI
Sbjct: 95  LCLICYDISIYTHLVISLNRFISLYFPTSYQNIFTERFTTFLI 137


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 127 PHYTRAHTNMHTHTLYTNIHQFKF-YITQFQKPYFY 23
           P  TR  T  HTHTL   I Q+K     Q +K  F+
Sbjct: 498 PSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFF 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,337,702
Number of Sequences: 27780
Number of extensions: 237513
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)