Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D02
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   4.8  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   8.4  

>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/40 (22%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 359 TIQAHTCVSHYNYLCSCQYLTHTISN-KISWCTDRXCSFL 475
           +I  + C++ + YL  C Y TH +++ ++ +C     +++
Sbjct: 61  SILHNICLASFLYLSKCYYHTHILTSVRLDFCKSHAHTYI 100


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = +3

Query: 315 VTSLLKSPCYLPMILLSRLIHVFPTXXXXXXXXXXXXQFLIKYLGVLIDXVLSWHEQINS 494
           +TS +K PC L + + +R   +  T                + LGV I  +  WH  + S
Sbjct: 721 LTSGMKRPCVLDVKMGTRQYGIMATEKKKASQTKKCAMTTSRVLGVRICGMQVWHPWLQS 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,816
Number of Sequences: 5004
Number of extensions: 43896
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)