Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_D01
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   161   5e-41
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.7  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   3.7  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   4.9  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   8.6  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  161 bits (392), Expect = 5e-41
 Identities = 84/153 (54%), Positives = 104/153 (67%), Gaps = 3/153 (1%)
 Frame = +3

Query: 123 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGL-SKGKHGFHVHEFGDNTNGCTSAG 293
           +AV VL GD  VSG V F+Q D++S V V  ++ G  +  K GFH+H+FGDNTNGCTSAG
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 294 AHFNPLKQEHGAPDSDTRHIG*XLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVV 473
            HFNP  + HG   +  RH+G  LGN+E+ + G + K    DS ISL G NSI+GRT+V+
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVG-DLGNLESDAQGNI-KTTFSDSVISLFGANSIIGRTIVI 120

Query: 474 HADPDHLGLGGHELSKSTGNAGARIACGVIGLA 572
           HA  D LG G  E S  TGNAGAR ACGVIG+A
Sbjct: 121 HAGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 462  CVQQCCWVQLTRSESP 415
            C Q+CC + LT S+SP
Sbjct: 1422 CAQECCRILLTDSKSP 1437


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/69 (21%), Positives = 29/69 (42%)
 Frame = +3

Query: 141 HGDVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQE 320
           H     +++FD  DE +    +  +  +++   G +  +  +  NG  S     N  K+E
Sbjct: 24  HPSAGDSIYFDSLDEDADPSRTARIDRIAELLDGLNDEQISELVNGVNSTTIKEN-TKKE 82

Query: 321 HGAPDSDTR 347
              P+  TR
Sbjct: 83  ISNPNDSTR 91


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 452 CWTHFGSPCGS*SSRTWRSRIEQVY 526
           C    GSP GS S  TW +    VY
Sbjct: 104 CLNSLGSPYGSASPVTWNAETHSVY 128


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 211 KSKDLVRASTVSMYMSLVTIPTVAPLLE 294
           K+KD +RA  +S+Y+ L  I   A LL+
Sbjct: 247 KNKDALRAHLLSLYLVLPLIGVTAGLLK 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,571
Number of Sequences: 5004
Number of extensions: 50394
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)