Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_D01
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 187 7e-48
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 186 1e-47
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 171 5e-43
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 135 2e-32
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 51 6e-07
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 40 0.001
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 5.1
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 6.7
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 27 8.9
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 187 bits (455), Expect = 7e-48
Identities = 89/151 (58%), Positives = 106/151 (70%), Gaps = 2/151 (1%)
Frame = +3
Query: 123 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 296
KAV VL V GT+ F Q+ + P V+G V GL G HGFH+H GD TNGC S G
Sbjct: 121 KAVVVLGSSEIVKGTIHFVQEGDG-PTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGP 179
Query: 297 HFNPLKQEHGAPDSDTRHIG*XLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVH 476
H+NP +EHGAP+ +TRH G LGN+ A DG V + + DSQI L GPNSI+GR +VVH
Sbjct: 180 HYNPAGKEHGAPEDETRHAG-DLGNVTAGEDG-VANIHVVDSQIPLTGPNSIIGRAVVVH 237
Query: 477 ADPDHLGLGGHELSKSTGNAGARIACGVIGL 569
ADPD LG GGHELSK+TGNAG R+ACG+IGL
Sbjct: 238 ADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 186 bits (453), Expect = 1e-47
Identities = 91/151 (60%), Positives = 105/151 (69%), Gaps = 2/151 (1%)
Frame = +3
Query: 123 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 296
KAV VL V GT+FF Q+ + P V+G V GL G HGFHVH GD TNGC S G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDG-PTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 297 HFNPLKQEHGAPDSDTRHIG*XLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVH 476
HFNP +EHGAP + RH G LGNI A +DG V V + DSQI L G +SI+GR +VVH
Sbjct: 62 HFNPTGKEHGAPQDENRHAG-DLGNITAGADG-VANVNVSDSQIPLTGAHSIIGRAVVVH 119
Query: 477 ADPDHLGLGGHELSKSTGNAGARIACGVIGL 569
ADPD LG GGHELSK+TGNAG R+ACG+IGL
Sbjct: 120 ADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 171 bits (415), Expect = 5e-43
Identities = 87/154 (56%), Positives = 101/154 (65%), Gaps = 2/154 (1%)
Frame = +3
Query: 123 KAVCVLHG--DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 296
KAV VL G V G V Q D+ P V+ V GL+ G HGFH+HEFGD TNGC S G
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 297 HFNPLKQEHGAPDSDTRHIG*XLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVH 476
HFNP HGAP+ + RH G LGNI A+++G V + I D QI L GPNS+VGR VVH
Sbjct: 112 HFNPNNLTHGAPEDEVRHAG-DLGNIVANAEG-VAEATIVDKQIPLSGPNSVVGRAFVVH 169
Query: 477 ADPDHLGLGGHELSKSTGNAGARIACGVIGLAKI 578
D LG GGHELS STGNAG R+ACGV+GL +
Sbjct: 170 ELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 135 bits (327), Expect = 2e-32
Identities = 65/118 (55%), Positives = 78/118 (66%)
Frame = +3
Query: 150 VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGA 329
V+G + F Q + V G V GL+ G HGFH+H FGD TNGC S G HFNP + HGA
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 330 PDSDTRHIG*XLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDHLGLG 503
P D RH+G LGNI A+ D GV + I+D QISL GP+SI+GR +VVHAD D LG G
Sbjct: 83 PSDDERHVG-DLGNIVANKD-GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 51.2 bits (117), Expect = 6e-07
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Frame = +3
Query: 198 VVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGAPDSDTRHIG*XLGNIE 377
+V GLS GKHG+ ++EFGD T G S G +NP P D LG +E
Sbjct: 191 IVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKPLGD-------LGTLE 243
Query: 378 ASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDHL--GLGGHELSKSTG 530
A + G + ++ +V ++GR++ ++A D G+ +++S G
Sbjct: 244 A-GEKGEAQFSASKEKLKVV---DLIGRSIALYATEDRSDPGIAAAVIARSAG 292
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +3
Query: 186 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAG 293
SS + V V GL HGFHVH G TNGC G
Sbjct: 34 SSLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 390 GGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDHLGLGGHELSKSTGNAGARIACGVIGL 569
GG+ V D+++SL G +V D GG+E S + G A + GV+
Sbjct: 261 GGLKTVAAVDTRVSLKAAELSGGGARIVRVDS-----GGYESSVACGGASGEVVVGVLYT 315
Query: 570 AKI*VFLL 593
++ F++
Sbjct: 316 GEVKNFVV 323
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 264 DNTNGCTSAGAHFNPLKQEHGAPDS 338
D TS GAH +PL+ H +P S
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSS 39
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 198 VVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGAPDSDTRH 350
++S VK +GK G ++H GC G + + H AP + H
Sbjct: 488 LISNAVKFTHEGKVGINLHVLDKQLPGCRIEGGQLH--SKAHSAPAAAAEH 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,000,645
Number of Sequences: 37544
Number of extensions: 363773
Number of successful extensions: 980
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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