Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C22
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0379 + 43177978-43178572,43178643-43178674                       34   0.075
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979     32   0.30 
08_01_1007 - 10201181-10201298,10202180-10202484,10202577-102027...    28   4.9  
09_01_0053 + 873918-874411,875255-875492,875682-875702                 27   8.6  

>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 305 LSYCCVSCPFRSKIH-TGSRTSYHLTRRRDYRFFRKYITA 189
           L Y C  C FR+    T S+T +HL  R +YR++  Y+ A
Sbjct: 157 LFYSCACCAFRNTATATSSKTIFHLHPRWEYRWYLLYLCA 196


>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
          Length = 158

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 383 RESHRRGHIPRYSSRGCPPRMRCFSRLSYCCVSCPFRSKIHTGSRTSYHLTRRRD 219
           RES RR  +   S+    P +  + RL  CC++    S +  G     H  +RRD
Sbjct: 43  RESRRRCALGGASAASESPPLHLYQRLPKCCITSHRCSTLRAGYPADLHGQKRRD 97


>08_01_1007 -
           10201181-10201298,10202180-10202484,10202577-10202726,
           10202954-10202956
          Length = 191

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +2

Query: 392 YANKCS--LECTQKIIPSL----KMEHDGECQGAKLASL 490
           + NKC   +EC QK  P L    K+  DG CQGA L  L
Sbjct: 125 FENKCKELIEC-QKASPQLLLTAKVTQDGSCQGAILDQL 162


>09_01_0053 + 873918-874411,875255-875492,875682-875702
          Length = 250

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 321 HARWASPATVPWNMPPSVALTEKLTPT 401
           HA+W+  ATV +   P + + E+L  T
Sbjct: 192 HAKWSPAATVTFMYEPEIRINEELMET 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,657,435
Number of Sequences: 37544
Number of extensions: 313599
Number of successful extensions: 901
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)