Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C19
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   1.5  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    24   4.4  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    23   5.9  

>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 187 LCNLETALNSCFSL*HCFSLP 125
           LC L+ A+  CFS   CF+LP
Sbjct: 162 LCELQDAIRICFS---CFTLP 179


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 237 LIKYNLYFILIKCSIHY 187
           LIK+N YF+L   S HY
Sbjct: 809 LIKHNSYFLLPTVSRHY 825


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 243 VILIKYNLYFILIKCSIHYFVIWKL 169
           +I+  Y+++ IL+  + HY   W +
Sbjct: 386 LIIALYSIFIILLSSNSHYSQFWAI 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,965
Number of Sequences: 5004
Number of extensions: 10006
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)