Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C18
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   0.47 
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   2.5  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    27   2.5  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    27   2.5  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    26   3.3  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   4.4  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   7.6  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.6  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   7.6  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 90   YYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLN 227
            Y   ++++VP P  +PE   K + +  E  +  V +  E+DG++L+
Sbjct: 1139 YLFEIIDVVPQPG-RPETRHKLKLVTREEIKGTVAVVCEVDGYLLS 1183


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 81  NPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQE 185
           N  YY  L      PW K + T+ TRA + E+ +E
Sbjct: 462 NGHYYALLKTEKDGPWYKYDDTRVTRATLREVLEE 496


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 520 NLSRGVICSNCLHTVSLLLFVV 455
           NL + +ICS C  + +LLLF++
Sbjct: 199 NLDKALICSTCSISAALLLFLL 220


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 520 NLSRGVICSNCLHTVSLLLFVV 455
           NL + +ICS C  + +LLLF++
Sbjct: 177 NLDKALICSTCSISAALLLFLL 198


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 3   STSTTLPSLFSENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQ 182
           +TS +   +  E  + K+      P  PP  V   E+    + KPE+  +  +++E +G+
Sbjct: 198 NTSFSETDVEEEKAEEKSDAESMAPSTPPKTVN--ELPEQIYEKPEIVLQPNSLIEPLGK 255

Query: 183 EPVTLSREI 209
               L RE+
Sbjct: 256 IIQVLKREV 264


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 170 FHDSSCFLSHFWFCPRR-WNYLYKWHVVWWINWMRH 66
           F  SS  L++    P R WN+L   H+V  + + RH
Sbjct: 252 FAGSSATLTYLDIVPARTWNHLCHGHLVMCMGYRRH 287


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 194 GDRLLAYFFHDSSCF-LSHFWFCPRRW 117
           G RLL Y+F+D  CF L++      RW
Sbjct: 204 GGRLLDYYFNDLVCFDLNNLNTSDSRW 230


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 128 PRRWNYLYKWHVV 90
           PR W++ YKW +V
Sbjct: 97  PRNWSHSYKWWIV 109


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 384 DNYIDRYGETIHNVSNTFGP---IPXMTTNKSRETVCKQLE 497
           +NY+D   ET+ N+++T+ P   +  ++  K  E   K++E
Sbjct: 217 ENYVDSAIETVININSTYPPGDILVFLSGRKEIEYCIKKIE 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,020
Number of Sequences: 5004
Number of extensions: 42079
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)