Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_C18
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 46 2e-05
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 42 3e-04
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 38 0.005
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 35 0.051
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 34 0.089
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230... 31 0.83
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 2.5
03_01_0110 - 865605-866004,866094-866712,867659-867863 29 3.4
06_01_1076 - 8778210-8778734 28 5.9
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646... 27 7.7
09_06_0127 + 21019266-21019670 27 7.7
07_03_0344 - 16976854-16977186,16978920-16979000 27 7.7
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 27 7.7
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +3
Query: 3 STSTTLPSLFSENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQ 182
+TS+ + + QVI H NPP + L+EI+ T EV K ++ E +G
Sbjct: 124 NTSSISITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEVFTKVKSFSERLG- 182
Query: 183 EPVTLSREIDGFVLNRIQYAILGEV-WRL 266
+ V S++ GF++NRI ++ E W L
Sbjct: 183 KTVICSQDYPGFIVNRILMPMINEAFWAL 211
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/90 (26%), Positives = 45/90 (50%)
Frame = +3
Query: 3 STSTTLPSLFSENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQ 182
+TST +L E + K +++ +H +P + +PL+EIV T P+V + ++I +
Sbjct: 428 NTSTIDLNLIGEKTRSKDRIVGAHFFSPAHVMPLLEIVRTQHTSPQVVVDLLDVGKKIKK 487
Query: 183 EPVTLSREIDGFVLNRIQYAILGEVWRLVD 272
P+ + GF +NR+ + VD
Sbjct: 488 TPIVVG-NCTGFAVNRMFFPYTQSALLFVD 516
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +3
Query: 3 STSTTLPSLFSENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQ 182
+TST L E + ++ +H +P + +PL+EIV + T P+V + ++I +
Sbjct: 443 NTSTIDLDLIGEKTNSQDRIAGAHFFSPAHVMPLLEIVRSNHTSPQVVVDLLDVGKKIKK 502
Query: 183 EPVTLSREIDGFVLNRI 233
PV + GF +NR+
Sbjct: 503 TPVVVG-NCTGFAVNRM 518
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 34.7 bits (76), Expect = 0.051
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +3
Query: 3 STSTTLPSLFSENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQ 182
+TST ++ E + ++I +H +P + +PL+EIV T P+ + + I +
Sbjct: 423 NTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKK 482
Query: 183 EPVTLSREIDGFVLNR 230
PV + GF +NR
Sbjct: 483 VPVVVG-NCTGFAVNR 497
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 33.9 bits (74), Expect = 0.089
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = +3
Query: 3 STSTTLPSLFSENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQ 182
+TST L + + ++ +H +P + +PL+EI+ T +V + ++I +
Sbjct: 425 NTSTIDLHLIGQKTSCQDRIAGAHFFSPAHAMPLLEIIRTHRTSSQVVIDLLNVAKQIRK 484
Query: 183 EPVTLSREIDGFVLNRIQYAILGEVWRLVD 272
P+ + GF +NR+ + + LVD
Sbjct: 485 TPIVVG-NCTGFAVNRMFFPFTQVAYFLVD 513
>05_05_0252 -
23621592-23621912,23621958-23622317,23622979-23623059,
23623262-23623633
Length = 377
Score = 30.7 bits (66), Expect = 0.83
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 111 IVPAPWTKPEVTKKTRAIMEEIGQEPVT 194
IVPAPW++P K +AI+++ G+ T
Sbjct: 282 IVPAPWSRPLSEKVIKAILKDNGETKTT 309
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 111 IVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLN 227
++PAPW K T K + + ++GQ + + I+G +N
Sbjct: 504 VLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVN 542
>03_01_0110 - 865605-866004,866094-866712,867659-867863
Length = 407
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +3
Query: 75 PVNPPYYVPL---VEIVPAPWTKPE 140
PV PP Y+ L ++VP PW +PE
Sbjct: 317 PVKPPTYLRLNSKAQLVPNPWRQPE 341
>06_01_1076 - 8778210-8778734
Length = 174
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +3
Query: 75 PVNPPYYVPL---VEIVPAPWTKPE 140
PV PP Y+ L ++VP PW +PE
Sbjct: 115 PVKPPTYLRLNSKPQLVPNPWRQPE 139
>12_01_1055 -
10861665-10861829,10862827-10863171,10864374-10864682,
10864813-10864968,10865669-10866117,10869275-10869359,
10869944-10870300,10870672-10871076
Length = 756
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 441 GRMYC*HYESSRRIDQCNYPCLQHSSAQSLVTQGKH 334
G++YC HY + R +Y C QS++ + H
Sbjct: 551 GKIYCDHYGTMRIKGSGDYSCKLKFKEQSIIDRNPH 586
>09_06_0127 + 21019266-21019670
Length = 134
Score = 27.5 bits (58), Expect = 7.7
Identities = 23/91 (25%), Positives = 36/91 (39%)
Frame = +3
Query: 3 STSTTLPSLFSENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQ 182
ST+ T PS + A S VN P P P P +P + T + EE +
Sbjct: 49 STTGTTPSAAASGSSSTASS--SRSVNAPPPPPTPTAAPPPLPRPAAAESTVVVREERRE 106
Query: 183 EPVTLSREIDGFVLNRIQYAILGEVWRLVDE 275
P E D +Y ++ E++ + +E
Sbjct: 107 HP-----EEDWEQRPGRRYRLIAEIYAVTEE 132
>07_03_0344 - 16976854-16977186,16978920-16979000
Length = 137
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +3
Query: 36 ENMKHKAQV--IVSHPVNPPYYVPLVEIVPA 122
+ +K+KA + +V+HP NP + P ++++PA
Sbjct: 22 KTLKYKAVLDYLVAHPPNPVFVGPRLDVMPA 52
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 441 GRMYC*HYESSRRIDQCNYPCLQHSSAQSLVTQGKH 334
G++YC HY + R Y C QS++ + H
Sbjct: 565 GKLYCDHYGTMRIQGNNEYSCKLKFKEQSIIDRNPH 600
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,590
Number of Sequences: 37544
Number of extensions: 268421
Number of successful extensions: 684
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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