Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_C16
(205 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 77 3e-16
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 77 3e-16
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 0.79
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 25 1.4
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 24 2.4
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 3.2
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 23 4.2
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 23 4.2
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 23 5.5
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 22 9.7
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 22 9.7
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 22 9.7
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 22 9.7
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 22 9.7
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 77.0 bits (181), Expect = 3e-16
Identities = 32/63 (50%), Positives = 52/63 (82%)
Frame = +2
Query: 2 GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGALT 181
GN++++++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ +I++G +
Sbjct: 102 GNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIE 161
Query: 182 IDE 190
I +
Sbjct: 162 IPQ 164
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 77.0 bits (181), Expect = 3e-16
Identities = 32/63 (50%), Positives = 52/63 (82%)
Frame = +2
Query: 2 GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGALT 181
GN++++++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ +I++G +
Sbjct: 102 GNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIE 161
Query: 182 IDE 190
I +
Sbjct: 162 IPQ 164
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 0.79
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Frame = -3
Query: 149 CHGGPCPP--QCIQQIVLC 99
CH GPCPP +++ LC
Sbjct: 298 CHPGPCPPCTATVEKFCLC 316
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 149 CHGGPCPPQCIQ 114
CH GPC P+C++
Sbjct: 604 CHRGPC-PRCLE 614
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 1.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 201 LIVYSSIVRAPLLISSMMSWGALPSTVHPTDCAVPRISF 85
LIV I+R PL I S+ W + P P++SF
Sbjct: 62 LIVVVMILRVPLCIISVTLWFLWSCFLKPILSIQPKLSF 100
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 67 LPLRLSKRNPWHSTICWMHCGGQGPP*HHR 156
+PLRL+ PW+ + + H G HH+
Sbjct: 765 IPLRLAGEKPWY--VEYSHTSGLNKVSHHK 792
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 105 HNLLDALWRAGPPMT-SSMIST 167
HNL LWR PP T S++++T
Sbjct: 368 HNLWMQLWRILPPNTLSTLVNT 389
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.4 bits (48), Expect = 4.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 121 HCGGQGPP 144
HCGGQ PP
Sbjct: 709 HCGGQAPP 716
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 23.4 bits (48), Expect = 4.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 125 QCIQQIVLCQGFLLLSLRGNVP--LNEDALSWQCQ 27
+ + +I L G+LL SL NVP L L CQ
Sbjct: 21 EALDEIFLNVGYLLRSLLANVPNALYHSQLQAACQ 55
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 1 WKYHNGRCHWHCQDNASSFNGTL-PLRLSKRNP 96
WK H +C +N ++F G PL + +P
Sbjct: 29 WKIHQSQCETVNDNNTTTFKGVKEPLNPPEPSP 61
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/36 (22%), Positives = 18/36 (50%)
Frame = +2
Query: 95 LGTAQSVGCTVEGRAPHDIIDDINSGALTIDE*TMS 202
+ + GC V P +ID + G++ + + ++S
Sbjct: 467 IAKCSNFGCQVMNHVPMIVIDQCDGGSIYLSKSSLS 502
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 135 LPSTVHPTDCAVPRISFT 82
LPST+HP A+ ++ T
Sbjct: 188 LPSTLHPHGAALMEVTMT 205
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 59 LNEDALSWQCQ 27
L EDA +WQCQ
Sbjct: 652 LMEDAENWQCQ 662
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = +2
Query: 158 DINSGALTIDE 190
D+NSG++TID+
Sbjct: 635 DVNSGSITIDD 645
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 22.2 bits (45), Expect = 9.7
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = +1
Query: 1 WKYHNGRCHWHC 36
W+ GRC W C
Sbjct: 406 WEVMTGRCVWKC 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 887,116
Number of Sequences: 5004
Number of extensions: 15262
Number of successful extensions: 41
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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