Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_C16
(205 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0416 + 28791512-28792012 80 2e-16
04_04_1026 + 30214437-30214937 77 2e-15
06_03_0784 - 24557089-24557198,24557296-24560725 28 1.2
03_05_0930 + 28908216-28908587 27 1.6
07_03_0468 - 18484386-18486377,18486741-18486827 27 2.8
04_03_0430 + 15836839-15836973,15837267-15837359,15838975-15839139 26 4.8
04_03_0420 + 15703479-15703613,15703907-15703999,15705615-15705779 26 4.8
03_03_0234 + 15669463-15669773,15669866-15670046,15670133-156702... 26 4.8
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 26 4.8
08_01_0945 + 9376997-9377818,9378065-9378373,9379510-9379800,938... 25 6.4
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 25 6.4
07_03_1287 + 25510813-25510862,25511326-25511504,25511715-255120... 25 6.4
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 25 6.4
12_02_0372 + 18212948-18213821,18213887-18214030,18214128-182142... 25 8.4
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 25 8.4
>02_05_0416 + 28791512-28792012
Length = 166
Score = 80.2 bits (189), Expect = 2e-16
Identities = 35/61 (57%), Positives = 50/61 (81%)
Frame = +2
Query: 2 GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGALT 181
GNI+++DVI IA++MRPRSMA+ ++G+VKEILGT SVGCTV+G+ P D+ +I+ G +
Sbjct: 103 GNISLDDVIEIARVMRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVE 162
Query: 182 I 184
I
Sbjct: 163 I 163
>04_04_1026 + 30214437-30214937
Length = 166
Score = 77.0 bits (181), Expect = 2e-15
Identities = 35/61 (57%), Positives = 49/61 (80%)
Frame = +2
Query: 2 GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGALT 181
GNI+++DVI IA+IMR RSMA+ ++G+VKEILGT SVGCTV+G+ P D+ +I+ G +
Sbjct: 103 GNISLDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVE 162
Query: 182 I 184
I
Sbjct: 163 I 163
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 168 LLISSMMSWGALPSTVHPTDCAVPRISF 85
LL + M+ W S +HPTD A SF
Sbjct: 1150 LLENDMIEWSTQTSLLHPTDSAASSSSF 1177
>03_05_0930 + 28908216-28908587
Length = 123
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 143 GGPCPPQCIQQIVLCQGFL-LLSLRGNVPLNE 51
G PCP + + +C L LL L+ NVP ++
Sbjct: 36 GNPCPTSALADLKVCADVLVLLKLKINVPASQ 67
>07_03_0468 - 18484386-18486377,18486741-18486827
Length = 692
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +2
Query: 23 VIGIAKIMRPRSMARYLSGSVKEIL-GTAQS---VGCTVEG--RAPHDIIDDINSGALTI 184
++G K + R+++ +L KE L G + S C + G A HDI+DD+ S + +
Sbjct: 397 IVGCLKASKVRALSSFLITLHKEDLKGPSHSDVISACILMGWLHAAHDILDDLESAEIPV 456
>04_03_0430 +
15836839-15836973,15837267-15837359,15838975-15839139
Length = 130
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 1 WKYHNGRCHWH 33
WKY + RC WH
Sbjct: 15 WKYSDERCRWH 25
>04_03_0420 +
15703479-15703613,15703907-15703999,15705615-15705779
Length = 130
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 1 WKYHNGRCHWH 33
WKY + RC WH
Sbjct: 15 WKYSDERCRWH 25
>03_03_0234 +
15669463-15669773,15669866-15670046,15670133-15670297,
15670426-15670992
Length = 407
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 32 IAKIMRPRSMARYLSGSVKEILG 100
+A + RPR +YL G ++++LG
Sbjct: 112 MAALTRPRYNGKYLQGKIRKMLG 134
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 149 CHGGPCPPQCIQQIVLCQ 96
CH GPCPP ++ C+
Sbjct: 271 CHDGPCPPCAVRGKHKCE 288
>08_01_0945 +
9376997-9377818,9378065-9378373,9379510-9379800,
9380060-9380173,9380280-9380981
Length = 745
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 125 QCIQQIVLCQGFLLLSLRGNVPLNEDALS 39
Q + ++VLC G + LRG P+ + ++S
Sbjct: 217 QSVDRLVLCLGCFWIKLRGIKPVADTSIS 245
>08_01_0033 +
244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 193 LFINSQSSTVDIIDDVMGGPALHSASNRLCCAKDF 89
+F+N Q+++ + M GP+ + + CA DF
Sbjct: 514 IFLNDQNASRENSVTAMAGPSANGYDPSVLCASDF 548
>07_03_1287 +
25510813-25510862,25511326-25511504,25511715-25512037,
25512160-25513950
Length = 780
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 5 NITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQ 109
N+ E+ G+ K P A+ +SG VKE L +AQ
Sbjct: 421 NVISEEAEGLVKEHGPDD-AQQISGPVKEALASAQ 454
>06_03_0783 - 24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 159 SSMMSWGALPSTVHPTDCAVPRISF 85
+ M+ W S +HPTD A SF
Sbjct: 1186 NDMIEWSIQTSLLHPTDSAASSSSF 1210
>12_02_0372 +
18212948-18213821,18213887-18214030,18214128-18214273,
18214854-18214862
Length = 390
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 93 SLAQHNLLDALWRAGPPMTSS 155
SL+++ LL A+WR G TSS
Sbjct: 11 SLSKNGLLCAIWRNGSTTTSS 31
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 7 YHNGRCHWHCQDNASSFNGTLPLRLSK 87
Y+ G HWH Q + +F L LSK
Sbjct: 724 YNTGLQHWHVQSYSLTFEPRLLFILSK 750
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,188,661
Number of Sequences: 37544
Number of extensions: 113317
Number of successful extensions: 342
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -