Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C16
         (205 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06505-1|AAA36157.1|  165|Homo sapiens ribosomal protein L12 pro...    94   6e-20
BC105603-1|AAI05604.1|  165|Homo sapiens ribosomal protein L12 p...    94   6e-20
BC094831-1|AAH94831.1|  165|Homo sapiens ribosomal protein L12 p...    94   6e-20
BC059950-1|AAH59950.1|  132|Homo sapiens RPL12 protein protein.        94   6e-20
BC050644-1|AAH50644.1|  165|Homo sapiens ribosomal protein L12 p...    94   6e-20
AL445222-15|CAH72929.1|  165|Homo sapiens ribosomal protein L12 ...    94   6e-20
AB209471-1|BAD92708.1|  197|Homo sapiens ribosomal protein L12 v...    93   2e-19
AL021366-3|CAA16156.1|  165|Homo sapiens cICK0721Q.2 (60S Riboso...    88   4e-18
BC033223-1|AAH33223.1|  192|Homo sapiens SLC45A4 protein protein.      29   2.7  
AL354798-8|CAI16639.1|   95|Homo sapiens protein ( Human DNA seq...    29   3.6  
AB061683-1|BAB85807.1| 2849|Homo sapiens polycystin-1L1 protein.       28   4.8  
AK129508-1|BAC85171.1|  474|Homo sapiens protein ( Homo sapiens ...    27   8.4  

>L06505-1|AAA36157.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 42/59 (71%), Positives = 52/59 (88%)
 Frame = +2

Query: 2   GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 178
           GNIT ++++ IA+ MR RS+AR LSG++KEILGTAQSVGC V+GR PHDIIDDINSGA+
Sbjct: 102 GNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160


>BC105603-1|AAI05604.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 42/59 (71%), Positives = 52/59 (88%)
 Frame = +2

Query: 2   GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 178
           GNIT ++++ IA+ MR RS+AR LSG++KEILGTAQSVGC V+GR PHDIIDDINSGA+
Sbjct: 102 GNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160


>BC094831-1|AAH94831.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 42/59 (71%), Positives = 52/59 (88%)
 Frame = +2

Query: 2   GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 178
           GNIT ++++ IA+ MR RS+AR LSG++KEILGTAQSVGC V+GR PHDIIDDINSGA+
Sbjct: 102 GNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160


>BC059950-1|AAH59950.1|  132|Homo sapiens RPL12 protein protein.
          Length = 132

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 42/59 (71%), Positives = 52/59 (88%)
 Frame = +2

Query: 2   GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 178
           GNIT ++++ IA+ MR RS+AR LSG++KEILGTAQSVGC V+GR PHDIIDDINSGA+
Sbjct: 69  GNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 127


>BC050644-1|AAH50644.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 42/59 (71%), Positives = 52/59 (88%)
 Frame = +2

Query: 2   GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 178
           GNIT ++++ IA+ MR RS+AR LSG++KEILGTAQSVGC V+GR PHDIIDDINSGA+
Sbjct: 102 GNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160


>AL445222-15|CAH72929.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 42/59 (71%), Positives = 52/59 (88%)
 Frame = +2

Query: 2   GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 178
           GNIT ++++ IA+ MR RS+AR LSG++KEILGTAQSVGC V+GR PHDIIDDINSGA+
Sbjct: 102 GNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160


>AB209471-1|BAD92708.1|  197|Homo sapiens ribosomal protein L12
           variant protein.
          Length = 197

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 41/59 (69%), Positives = 51/59 (86%)
 Frame = +2

Query: 2   GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 178
           GNIT ++++ I + MR RS+AR LSG++KEILGTAQSVGC V+GR PHDIIDDINSGA+
Sbjct: 134 GNITFDEIVNIVRQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 192


>AL021366-3|CAA16156.1|  165|Homo sapiens cICK0721Q.2 (60S Ribosomal
           Protein L12 LIKE protein) protein.
          Length = 165

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 39/59 (66%), Positives = 50/59 (84%)
 Frame = +2

Query: 2   GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 178
           GNIT ++++ IA+ MR RS+AR LSG++KEI GTAQS+GC V+G  PHDIIDDINSGA+
Sbjct: 102 GNITFDEIVNIARQMRHRSLARELSGTIKEIPGTAQSMGCNVDGHHPHDIIDDINSGAV 160


>BC033223-1|AAH33223.1|  192|Homo sapiens SLC45A4 protein protein.
          Length = 192

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -3

Query: 143 GGPCPPQCIQ-QIVLCQG 93
           G PCPPQC Q  + LC+G
Sbjct: 141 GIPCPPQCCQGHVALCRG 158


>AL354798-8|CAI16639.1|   95|Homo sapiens protein ( Human DNA
           sequence from clone RP11-756A22 on chromosome 13
           Contains the 3' end of a novel gene, the CENJP gene for
           centromere protein J ).
          Length = 95

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 140 GPCPPQCIQQIVLCQGFLLLSLRGNVPLNEDALSWQCQ*HLPL*YF 3
           G C P C+Q I  C+GF+   +   + +N+    +  Q +LP  YF
Sbjct: 29  GLCLPYCLQNIFNCRGFIYQEMNWIIHINKKLGKFIHQ-NLPWRYF 73


>AB061683-1|BAB85807.1| 2849|Homo sapiens polycystin-1L1 protein.
          Length = 2849

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 22   CHWHCQDNASSFNGTLPLRLSKRNPWHSTICWMHCG 129
            C  H Q  +S   G +P       PW S+  W  CG
Sbjct: 2107 CPPHTQAPSSGLEGLMPQWSRALQPWWSSAVWAICG 2142


>AK129508-1|BAC85171.1|  474|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25997 fis, clone DMC06923, highly similar to Ig
           gamma-1 chain C region. ).
          Length = 474

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 71  LSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGALT 181
           L+ S K   G   ++GC V+   P  +    NSGALT
Sbjct: 155 LAPSSKSTSGGTAALGCLVKDYFPESVTVSWNSGALT 191


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,442,115
Number of Sequences: 237096
Number of extensions: 649141
Number of successful extensions: 2003
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 76,859,062
effective HSP length: 46
effective length of database: 65,952,646
effective search space used: 1385005566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)