Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C16
         (205 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...    87   2e-18
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    73   4e-14
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z75713-5|CAB00054.1|  598|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AC025716-22|AAK39613.1|  630|Caenorhabditis elegans Zwilch (dros...    25   5.6  
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    25   7.4  
L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell l...    25   9.7  
AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.     25   9.7  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 38/61 (62%), Positives = 52/61 (85%)
 Frame = +2

Query: 2   GNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGALT 181
           G++T++ +I IA+IMRPRSMA+ L G+VKEILGTAQSVGCT++G+ PHDII+ I +G + 
Sbjct: 102 GDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIE 161

Query: 182 I 184
           I
Sbjct: 162 I 162


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +2

Query: 44  MRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGALTI 184
           MRPRSMA+ L G+VKEILGTAQSVGCT++G+ PHDII+ I +G + I
Sbjct: 1   MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 47


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 149 CHGGPCPPQCIQQIVLCQ 96
           CH GPCPP  +   V+C+
Sbjct: 513 CHEGPCPPCNLNTSVICR 530


>Z75713-5|CAB00054.1|  598|Caenorhabditis elegans Hypothetical
           protein T01G9.4 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 22  CHWH-CQDNASSFNGTLPLRLSKRNPWHSTICW 117
           C  H  +D  S    T+  R  K+  W ST+ W
Sbjct: 407 CEEHRLEDAKSCVTNTMTFRYLKQGHWSSTLAW 439


>AC025716-22|AAK39613.1|  630|Caenorhabditis elegans Zwilch
           (drosophila) homolog protein1 protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 31  HCQDNASSFNGTLPLRLSKRNPWHSTICWMHCG 129
           +C ++ S    TLP+ +S  +    +ICW+  G
Sbjct: 159 NCSEHFSPSISTLPVWISTTSSKFPSICWLAAG 191


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
            D2085.1 protein.
          Length = 2198

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 169  TVDIIDDVMGGPALHSASNRLCCAKD 92
            T+ ++ D+  G  +HS +  LC  KD
Sbjct: 2028 TIALVGDLKNGRTVHSLAKLLCLYKD 2053


>L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell
           lineage protein 36 protein.
          Length = 962

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 64  TLPLRLSKRNPWHSTICWMH 123
           T P + S R PW  T+C  H
Sbjct: 255 TTPSKKSSRVPWVCTVCEFH 274


>AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.
          Length = 962

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 64  TLPLRLSKRNPWHSTICWMH 123
           T P + S R PW  T+C  H
Sbjct: 255 TTPSKKSSRVPWVCTVCEFH 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,020,794
Number of Sequences: 27780
Number of extensions: 90082
Number of successful extensions: 248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)