Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C15
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.30 
SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    28   0.69 
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.1  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    26   3.7  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    25   4.9  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   4.9  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   8.5  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.5  

>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
 Frame = +2

Query: 62  TISTCPAGFLA--------SYRSVCKHQQPLSFLKSRLSMTSTILLSCSHSPL 196
           T+STCP  FL+        S   + K    L F ++ L+++ +++++  HSPL
Sbjct: 151 TVSTCPLSFLSYSTGVERLSKELILKDLLSLQFQQALLAISPSVIVTSEHSPL 203


>SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 110

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 17 EYLKASAVSSMIVW-CTISTCPAGFLA 94
          + +K +  SS+ VW   +STCPAG LA
Sbjct: 8  QVIKLNPSSSIFVWGSNVSTCPAGDLA 34


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 467 SQCLPASHIHRDTILY 420
           ++CLP+S  HRD ILY
Sbjct: 263 AKCLPSSSKHRDRILY 278


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 300 RPSFSTLIMPLFPKTSSLCRNHMQSSAVITKY*GARGECEQESNIVEV 157
           RPS      P F  TSS  R  +QS  +++K  G +      + + EV
Sbjct: 7   RPSTRCAGSPHFNSTSSFLRKRLQSKTILSKRLGFQFRPSSTNVLAEV 54


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 55  LVHDFDMSCWVLGELPIRVQASAAALIPEIKAIDDF 162
           LV    M CW    LP+ +QA  +A IP   +++++
Sbjct: 127 LVERGSMECWSEEGLPMSLQAVYSASIPLCGSLENY 162


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 257 LRASVVTICRVALLSPSTK 201
           L+ S VTIC VA+++PS++
Sbjct: 148 LKLSEVTICSVAVINPSSQ 166


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 360 SFPSRYRLAYKNEMEHFLDVVQNGVPMDVTSWQTLAVS 473
           +FP+R+ L+Y  +++H+   +   V  +V    TL +S
Sbjct: 323 TFPTRHVLSYFPQVKHWFVEINAAVGEEVAKSYTLVLS 360


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 298 AFVFNLDHAFVSENFEPLS*PY 233
           AFVF   H  VS  F  L  PY
Sbjct: 42  AFVFLFSHTLVSSQFRRLKLPY 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,431
Number of Sequences: 5004
Number of extensions: 46399
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)