Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C15
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459...    29   2.8  
09_02_0623 - 11317468-11317471,11318393-11318948,11319072-11319156     28   3.7  
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329...    27   8.6  
01_03_0038 + 11862743-11862884,11863145-11863704,11863733-118637...    27   8.6  

>05_05_0138 +
           22644263-22644460,22644617-22644711,22645786-22645949,
           22646725-22646970,22647600-22647944,22648516-22648586,
           22648676-22648794,22650508-22650637,22650806-22650857,
           22650974-22651136,22651244-22651418,22651772-22651942,
           22652275-22652388,22652559-22652609
          Length = 697

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 272 GMIKVENEGLPFNGGGARSRGNQDVTYLLLVPVSIQ 379
           G++KV N  +   GG ++SR NQ + YL L  +S++
Sbjct: 139 GIVKVLNNYMDVGGGKSKSR-NQGLYYLYLEAISVR 173


>09_02_0623 - 11317468-11317471,11318393-11318948,11319072-11319156
          Length = 214

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 502 ALSSAAVAILLTANVCQLVTSIGTPFCTT 416
           AL + AVA+  + +VC L T  GTPF ++
Sbjct: 151 ALEAIAVAVASSLSVCLLDTGHGTPFISS 179


>01_06_0756 -
           31731607-31731752,31732368-31732467,31732716-31732943,
           31733390-31733474,31733583-31733662,31733755-31733826,
           31733964-31734058,31735442-31735523,31735646-31735927
          Length = 389

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 77  PAGFLASYRSVCKHQQPLSFLKSRLSMTSTILLS 178
           P G +AS+R + K  Q LS +++ L  +S +++S
Sbjct: 123 PIGVIASFRRMKKLSQDLSIIEAALRTSSKLVVS 156


>01_03_0038 +
           11862743-11862884,11863145-11863704,11863733-11863777,
           11864174-11864563
          Length = 378

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = +2

Query: 8   SLFEYLKASAVSSMIVWCTISTCPA-GFL---ASYRSVCKHQQPLSFLKSRLSMTSTIL 172
           S F+ L  S ++SM+  CT + CPA  FL    +YR V   ++    +++RL  +S+ L
Sbjct: 154 SAFDRLMGS-LTSMVPACTTAACPAHQFLEKFLTYRFVMGVREDFDSIRTRLLHSSSTL 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,294
Number of Sequences: 37544
Number of extensions: 328489
Number of successful extensions: 853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)