Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C15
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical ...    27   5.8  

>Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 352 SSTRSRLDTDLPIKMK--WNISWMLYRMVS 435
           ++TRS L +  P+ MK  W+  W LYR+ S
Sbjct: 152 NTTRSLLPSKAPMMMKPKWHAPWKLYRVAS 181


>Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 352 SSTRSRLDTDLPIKMK--WNISWMLYRMVS 435
           ++TRS L +  P+ MK  W+  W LYR+ S
Sbjct: 152 NTTRSLLPSKAPMMMKPKWHAPWKLYRVAS 181


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 59   CTISTCPAGFLASYRS 106
            CTIS CPAG+  +YR+
Sbjct: 1389 CTISRCPAGYECTYRN 1404


>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +1

Query: 22  LEGFSGVFHDCLVHDFDMSCWVLGELPIRVQASAAALIPEIKAIDDFDNIAFLLTF 189
           ++ F       ++  ++   W+LGE  I +Q     +  E+  + +F N+ FL +F
Sbjct: 74  VQWFETFIGSLMILPYESGYWILGESNITIQQGWTDIESEMIKVPNFFNLFFLGSF 129


>Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical
           protein F28F8.8 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 501 RSLQLLWRSCLQPMFAS*SHP*GHHSVQ-HPRNVPFH 394
           +S+  +W+SCL P+F   +H      +Q H +NV  H
Sbjct: 206 KSIHFIWKSCLCPVFMHLTH---FSDIQIHMKNVSVH 239


>AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical
           protein R02D3.1 protein.
          Length = 934

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 354 FYSFPSRYRLAYKNEMEHFLDVVQNGVPMDVTSWQTLAV 470
           F  FP RY   +  E+  +  V+ NGV  D  S + + +
Sbjct: 290 FEQFPDRYTSKFATEIAPYASVIINGVYWDAQSPRLITI 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,633,114
Number of Sequences: 27780
Number of extensions: 268111
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)