Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C14
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    29   0.48 
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    26   3.4  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.8  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 343 WSPRSSTIYNTFRLYNSSLSVNACYFLIPEYIVRVMNIK 227
           W  +SS++ N+FR+ +S    NAC  L P  I R+  ++
Sbjct: 564 WLVKSSSLDNSFRIRDSENVRNACKSLDPLTIERIATLQ 602


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 174 SALQVIVASIVPSSGTNNAILKTDGSKSGNFF-*ASYGSSISLDIPIAFPK 25
           +ALQ I ++I+P     N I   DG    + F  A +  +I   +PIA  K
Sbjct: 218 TALQYITSNILPEVKNENVISFGDGQNDLSMFAIAGWSVAIKNGMPIAIEK 268


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 150 MPLSLAMHSLKSQSKMVERFTKIVRCLIFITRTIYSGIR 266
           +P + +  SLKSQ+ +V R +    CL    R I+  +R
Sbjct: 150 IPSNASSISLKSQNSIVSRTSNPFSCLNHSPRQIHKTVR 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,190
Number of Sequences: 5004
Number of extensions: 61109
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)