Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_C14
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0245 + 15995689-15995742,15995979-15996075,15996165-159961... 30 1.5
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 29 2.0
09_06_0279 + 22001589-22002237,22002909-22004044,22006050-220070... 28 4.6
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 28 4.6
01_06_1560 + 38251268-38251471,38251567-38251672,38251992-382522... 28 4.6
11_03_0060 - 9406273-9407142 28 6.0
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 28 6.0
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120... 27 8.0
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 27 8.0
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 27 8.0
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 27 8.0
01_05_0175 - 18936752-18937621,18938855-18941641 27 8.0
>09_04_0245 +
15995689-15995742,15995979-15996075,15996165-15996185,
15996442-15996573,15996707-15996834,15996919-15997203,
15997391-15997521,15999700-15999817,16000609-16000703,
16001437-16001511,16001860-16001911,16002767-16002859,
16003625-16003690,16003785-16003867,16003942-16004054,
16005271-16005410,16005569-16005643,16006084-16006160,
16006426-16006514,16008039-16008085,16009004-16009138,
16009298-16009345,16009605-16009667,16009709-16009730,
16010284-16010458,16014250-16014321,16014887-16014958,
16015904-16016005,16016197-16016225,16016333-16016403,
16016549-16016597,16016684-16016784,16017495-16017623,
16017683-16017752,16017975-16018194,16019368-16019389,
16019457-16019604,16021569-16021693,16022344-16022774,
16022984-16023110,16023241-16023292,16023351-16023502
Length = 1461
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = -3
Query: 361 GESSNTWSPRSSTIYNTFRLYNSSLSVN--ACYFLIPEYIVRVMNIKHRTIFVNLSTILL 188
G S+ P SST +F ++++ + N A L+P + R M + T+FV++
Sbjct: 338 GASTPLSDPPSSTYKTSFLVFHNPDNDNSWAIKRLLPFLLTRSMGVV--TLFVSIGVYAE 395
Query: 187 CDFNECIASDSGIN 146
F+ A+DSGIN
Sbjct: 396 TVFDGSPAADSGIN 409
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 474 WYKFVSWSLMLGQLRTSGVASHNTYACLKGTKGREGTPANLATR 343
W KF+ ++ L T+ A+ + YA L+G GR P + R
Sbjct: 499 WRKFLEEQMIARNLTTNEAANQSRYAYLRGPDGRFRNPYSRGCR 542
>09_06_0279 +
22001589-22002237,22002909-22004044,22006050-22007058,
22007129-22007301,22007730-22008785
Length = 1340
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 381 WYLSNTHTCYARLLLKFATVLTSETTTQICTIKISGESCAV-GGYEGNPHM 530
W + + H C A L S + T +G C GGYEGNP++
Sbjct: 161 WAIRDVHNCSAAKLNATNYACRSANSKCSDTTDGAGYRCRCSGGYEGNPYL 211
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 28.3 bits (60), Expect = 4.6
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Frame = +2
Query: 119 ALFVPEDGTIDATITCNALIKVAKQNGG--------KVYEDCPVLDIHYSHNILGNKEVT 274
A+F+PED IDA A+ + K NG ++Y D P + + S V
Sbjct: 210 AMFLPEDCQIDA---FQAVSLIEKTNGSYSSEGRYMEIYND-PAMSLVRSET---TGTVQ 262
Query: 275 GVHTERGII-KTKCVVNCGGAWGPRVARFAGVPS----LPLVPFK-HAYVL 409
GV T + I+ K +V GAW + R P+ +P++P K H VL
Sbjct: 263 GVQTSKHILYGRKAIVIASGAWTRTLLRSFLEPNPTLDIPVMPRKGHLLVL 313
>01_06_1560 +
38251268-38251471,38251567-38251672,38251992-38252203,
38252306-38252512,38253327-38254694
Length = 698
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 389 FKHAYVLCEATPEVRNCPNIR 451
+ AY++C+ + EV CPN R
Sbjct: 460 YSTAYLICDGSSEVETCPNSR 480
>11_03_0060 - 9406273-9407142
Length = 289
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -3
Query: 448 DVRTVANFRSSLA*HVCVFE-RYQGKGGYTGESSNTWSPRSSTIYNTFRLYNSSLSVNAC 272
D +T + S +C F+ RY G S+ S + + LYN ++ C
Sbjct: 159 DKKTYTDSFISCIDELCTFKLRYLQVGCDVTNDSSLDFMLDSWYHPPYPLYNFQMTTYYC 218
Query: 271 YFLIPEYIVRVMNI 230
+ +IPE++ + N+
Sbjct: 219 FPIIPEWMATLFNV 232
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 161 TCNALIKVAKQNGGKVYEDCPVLDIHYSHNILGN 262
+C+A + NG +Y+ C +LD+ + H GN
Sbjct: 107 SCDAERARSVTNGRNIYDGCCLLDVQHVHPFNGN 140
>06_01_0160 -
1205454-1205482,1205647-1205732,1205903-1205956,
1206035-1206130,1207332-1207448,1207834-1207952
Length = 166
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 543 GPDLTYGGSLHILLLHSFHR*F*WYKFVSWSLMLGQLRTSG 421
G D +L I ++ HR WY + W L+ G+LR G
Sbjct: 59 GEDTQEAKALMIAIVPHLHR---WYSRLRWPLLAGRLRRVG 96
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 215 DCPVLD--IHYSHNILGNKEVTGVHTERGIIK 304
D P+ D I + H+ILGNKE GV + +I+
Sbjct: 32 DEPIEDTSIPFQHDILGNKEDEGVESSPKVIR 63
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 388 RYQGKGGYTGESSNTWSPRSSTIYNTFRL 302
+Y GY G +S TW P S T T L
Sbjct: 965 KYLRISGYNGSTSPTWLPSSLTCLQTLHL 993
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 381 WYLSNTHTCYARLLLKFATVLTSETTTQIC--TIKISGESC-AVGGYEGNPHM 530
W + N + C A + AT +T C TI G C GYEGNP++
Sbjct: 260 WAIRNVYNCSAAK--RNATDYACRSTNSECFDTIDGQGYRCNCCQGYEGNPYL 310
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 27.5 bits (58), Expect = 8.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 314 VVNCGGAWGPR 346
+V+CGG WGPR
Sbjct: 314 IVDCGGGWGPR 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,145,973
Number of Sequences: 37544
Number of extensions: 403907
Number of successful extensions: 1011
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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