Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C13
         (233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    24   3.1  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    23   4.1  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    23   5.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    22   9.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    22   9.4  

>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 33  LSMYSVSDTQTAQIYLFIK-FQDTXRKXRVLVSFDLKFR 146
           LS+Y  S +++AQ+ L +K  Q   R       F L+F+
Sbjct: 54  LSIYKGSKSESAQVTLLLKDIQKVERSKSRTFCFKLRFK 92


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 45  SVSDTQTAQIYLFIKFQDTXRKXRVLVSFDL 137
           SV D     +YL  +F+DT  + R  ++ DL
Sbjct: 90  SVQDICNVVVYLKERFKDTNFEARGFIAHDL 120


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 135 LKFRYFFIEHIYKFXKVLFRVGFXP 209
           ++F +F I  +  F  +LF +GF P
Sbjct: 1   MRFAFFGIFWLQIFGSILFLLGFFP 25


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 22  YVFSYRCIALVIRKQLKF 75
           ++ S  C+A ++R+ LKF
Sbjct: 576 FMLSIPCVAEIVREDLKF 593


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +3

Query: 42   YSVSDTQ--TAQIYLFIKFQD 98
            + V+ TQ  T+ +YLF+K+ D
Sbjct: 1290 FEVAKTQKKTSSVYLFVKYLD 1310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,742
Number of Sequences: 5004
Number of extensions: 7995
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)