Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C13
         (233 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0093 + 13330867-13332312                                         29   0.70 
11_08_0016 + 27652728-27653011,27653105-27653198,27653277-276537...    25   8.6  
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004     25   8.6  

>07_03_0093 + 13330867-13332312
          Length = 481

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 33  LSMYSVSDTQTAQIYLFIKFQDTXRKXRVLVSFDL 137
           LSM + S T+ +  +LF  F+   R    +V+FD+
Sbjct: 211 LSMAATSATEVSSPWLFTSFESARRNSSAVVTFDM 245


>11_08_0016 +
           27652728-27653011,27653105-27653198,27653277-27653738,
           27653819-27654651,27654734-27654886,27654984-27655242,
           27655653-27655691,27655708-27655791
          Length = 735

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 22  YVFSYRCIALVIRKQLKFTYLSSFKTRD 105
           Y+  Y  + +++ K  +  YL+S KT+D
Sbjct: 607 YIMRYWILLVIVPKWSRINYLNSNKTKD 634


>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
          Length = 578

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 126 SFDLKFRYFFIEHIYKFXKVLFRVGFXPSFRAS 224
           SFD   R FF   ++ +  ++ R+ F   FR S
Sbjct: 421 SFDAVARTFFFMALFLYMSLVVRINFFRGFRFS 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,858,257
Number of Sequences: 37544
Number of extensions: 39475
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)