Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_C12
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 163 2e-41
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 162 3e-41
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 94 1e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 59 5e-10
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.37
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 27 2.6
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.4
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 6.0
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 25 7.9
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 7.9
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 25 7.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 163 bits (396), Expect = 2e-41
Identities = 86/142 (60%), Positives = 97/142 (68%), Gaps = 5/142 (3%)
Frame = +2
Query: 128 EHSDCAFMVDNEAIL*HLAA*LGY*TPDLTPNLNRLIGQIVSSITASLRFDGALNVDLTG 307
++SDC FMVDNEA L P NLNRLI Q+VSSITASLRF G+LNVDL
Sbjct: 200 DNSDCTFMVDNEACYDICRRNLDIERPTYE-NLNRLIAQVVSSITASLRFAGSLNVDLNE 258
Query: 308 VQTKLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPXNQMVKCDPRHGKYMV 487
QT LVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YM
Sbjct: 259 FQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMA 318
Query: 488 WLL-----VVPR*TSCPRTSTR 538
L V+PR TS +
Sbjct: 319 TCLLYRGDVIPRDVQAAVTSIK 340
Score = 41.5 bits (93), Expect = 8e-05
Identities = 24/49 (48%), Positives = 28/49 (57%)
Frame = +3
Query: 66 QVSTAVVEAYNSILYNPHNPGNTPIVLSWSTMKPFYDIWPRNLDIERPT 212
QVST+VVE YNS+L N+ + YDI RNLDIERPT
Sbjct: 180 QVSTSVVEPYNSVLTTHATLDNSDCTFMVDN-EACYDICRRNLDIERPT 227
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 162 bits (394), Expect = 3e-41
Identities = 80/122 (65%), Positives = 90/122 (73%)
Frame = +2
Query: 134 SDCAFMVDNEAIL*HLAA*LGY*TPDLTPNLNRLIGQIVSSITASLRFDGALNVDLTGVQ 313
+DC FMVDNE+ L P NLNRLI Q+VSSITASLRF+G+LNVDL Q
Sbjct: 198 ADCTFMVDNESCYDICRRNLDIERPSYE-NLNRLIAQVVSSITASLRFEGSLNVDLAEFQ 256
Query: 314 TKLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPXNQMVKCDPRHGKYMVWL 493
T LVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YM
Sbjct: 257 TNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATC 316
Query: 494 LV 499
L+
Sbjct: 317 LL 318
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/49 (46%), Positives = 28/49 (57%)
Frame = +3
Query: 66 QVSTAVVEAYNSILYNPHNPGNTPIVLSWSTMKPFYDIWPRNLDIERPT 212
QVST+VVE YNS+L H + + YDI RNLDIERP+
Sbjct: 176 QVSTSVVEPYNSVL-TTHATLDLADCTFMVDNESCYDICRRNLDIERPS 223
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 94.3 bits (224), Expect = 1e-20
Identities = 46/119 (38%), Positives = 71/119 (59%)
Frame = +2
Query: 128 EHSDCAFMVDNEAIL*HLAA*LGY*TPDLTPNLNRLIGQIVSSITASLRFDGALNVDLTG 307
E+SD F +DNEA+ A L +P +LN L+ +++ +T S RF G LN DL
Sbjct: 194 ENSDETFCIDNEALSSIFANTLKIKSPSYD-DLNHLVSAVMAGVTTSFRFPGELNSDLRK 252
Query: 308 VQTKLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPXNQMVKCDPRHGKYM 484
+ +VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+
Sbjct: 253 LAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYL 311
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.8 bits (136), Expect = 5e-10
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Frame = +2
Query: 131 HSDCAFMVDNEAIL*HLAA*LGY*TPDLTPNLNRLIGQIVSSITASLRFDGALNVDLTGV 310
++D ++DN A+ H+AA + N+L+ ++S+ T +LR+ G +N DL +
Sbjct: 198 NADSVVVLDNAALA-HIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSI 256
Query: 311 QTKLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAEITNACFEPXNQMVKCDPRHGKY 481
L+P PR HF L +Y P + E + +V ++ P NQMV +P
Sbjct: 257 IASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSC 316
Query: 482 MVWLLVVPR*TSCPRTSTRVSLPIKDQAH 568
+ +L + + + P + L I+++ +
Sbjct: 317 FISILDIIQGEADPADVHKSLLRIRERRY 345
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.5 bits (63), Expect = 0.37
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Frame = +3
Query: 72 STAVVEAYNSILYNPHNPGNTPIVLSWSTMKPFYDIWPRNLDIERPT*HRTSIGLS--GK 245
ST+ +S Y+P +P +P S+S P Y + P+ TS S
Sbjct: 1566 STSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625
Query: 246 SYHRLPPLCVSTAPSMSI*RESRPNWCPTHVSIS 347
SY P T+PS S + P++ PT S S
Sbjct: 1626 SYSPTSPSYSPTSPSYS---PTSPSYSPTSPSYS 1656
Score = 27.9 bits (59), Expect = 1.1
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = +3
Query: 108 YNPHNPGNTPIVLSWSTMKPFYDIWPRNLDIERPT*HRTSIGLS--GKSYHRLPPLCVST 281
Y+P +P +P S+S P Y + P+ TS S SY P T
Sbjct: 1641 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700
Query: 282 APSMSI*RESRPNWCPTHVSIS 347
+PS S + P++ PT S S
Sbjct: 1701 SPSYS---PTSPSYSPTSPSYS 1719
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 502 YNQQPDHVFPVTRVTFHHLVXGLEASVRDLRYR 404
Y QQ D + + H++ GL+A + +RYR
Sbjct: 67 YLQQKDPEIDIVQPILKHILRGLDAKDKTVRYR 99
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -2
Query: 567 CAWSLIGSDT-RVDVLGHDVHRGTTSN 490
C W D +D L H +H GTTSN
Sbjct: 26 CHWQSCEQDLLTLDNLVHHIHNGTTSN 52
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +3
Query: 129 NTPIVLSWSTMKPFYD---IWPRNL 194
N PI +T+KPF+D W RNL
Sbjct: 258 NVPIFFDKNTIKPFHDPTVPWDRNL 282
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 7.9
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +2
Query: 215 TPNLNRLIGQIVSSITASLRFDGALNVDLTGVQTKLVPYPRIHFPLVTYAPVISAEKAYH 394
TPNL +IGQI++ A++R +V + + IH + P ++AY
Sbjct: 272 TPNLTSIIGQILNR-NANIRGIFVGSVSMFRDMVACIEAKDIHPVVDKVFPFDQLKEAYE 330
Query: 395 EQLSVAEI 418
Q S A I
Sbjct: 331 YQWSQAHI 338
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 536 ALTSLGTTFTAVQPATRPCISRDAGHI 456
+L +LGT + + A P ++ ++GHI
Sbjct: 384 SLLTLGTVISRLSAAANPSLTSNSGHI 410
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 117 HNPGNTPIVLSWSTMKPFYDIWPRNLDIERPT 212
H+P T W +M P Y ++P N + R T
Sbjct: 525 HSP--TYDTYGWQSMYPSYSVYPSNYENSRST 554
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,961
Number of Sequences: 5004
Number of extensions: 47058
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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