Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C12
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.7  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   8.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 519 HDVHRGTTSNQTMYFP*RGSHFTIWLXGSKQA 424
           HD H G  + + + F   G    +W+ G  +A
Sbjct: 204 HDDHYGVPTLEELGFDTEGLLPPVWVGGESEA 235


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 478 FPVTRVTFHHLVXGLEASVRDLRYR 404
           FP+ R   H  +     ++RD+RY+
Sbjct: 145 FPMDRQLCHIEIESFGYTMRDIRYK 169


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 478 FPVTRVTFHHLVXGLEASVRDLRYR 404
           FP+ R   H  +     ++RD+RY+
Sbjct: 145 FPMDRQLCHIEIESFGYTMRDIRYK 169


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 162 KPFYDIWPRNLDI 200
           KP YDIW   +++
Sbjct: 912 KPHYDIWGNTVNV 924


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 478 FPVTRVTFHHLVXGLEASVRDLRYR 404
           FP+ R   H  +     ++RD+RY+
Sbjct: 84  FPMDRQLCHIEIESFGYTMRDIRYK 108


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 98  LYSLQPTQPWEHSDCAFMVDNE 163
           LY+L+ T P+++++  F +  E
Sbjct: 49  LYTLKTTSPFKNTEIKFKLGEE 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,216
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)