Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C11
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    91   7e-20
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   3.9  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   6.8  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 91.5 bits (217), Expect = 7e-20
 Identities = 48/125 (38%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
 Frame = +2

Query: 149 RDVSREGTYQGKHTILVTKGLR*GXXXXXXXXXXXXXXXXXXXXHRSLSPNIEIGSI*PP 328
           RD+S E    G HT  VTKGL+ G                    H SLSP  E+G++ PP
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPP 128

Query: 329 LRITP--FNPFHIPLLNTIILISSGVTVT*THHALIENNYSQATXSLFITITLGIYFTIL 502
           + I     +P  +PLLNT+IL++SG ++T  H++LI  N   A   L++TI L   F   
Sbjct: 129 VGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGG 188

Query: 503 QAYDY 517
           QAY+Y
Sbjct: 189 QAYEY 193


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 43  SYNFSNWFSKMIP*F*YKSINYWL 114
           S++  NW + MIP    K + YW+
Sbjct: 119 SFDCLNWVNSMIPNLPEKELQYWI 142


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 49  NFSNWFSKMIP 81
           NFSNW SK+IP
Sbjct: 643 NFSNWKSKLIP 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,422
Number of Sequences: 5004
Number of extensions: 15747
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)