Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C10
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    29   0.31 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   2.2  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   2.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.2  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   2.9  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   3.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   5.0  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   6.6  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   6.6  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   8.7  

>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -3

Query: 410 FAKIKLKLNK--GNFTKCESINSRVNKDIKNNLLKDVIVTDLPMEL-RESFENICERIN 243
           FA +  +LN   G+F+K  S+N  +   +  N+   ++ TD+ + L +E   NI ++IN
Sbjct: 3   FADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKIN 61


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = -3

Query: 359 SINSRVNKDIKNNLLKDVIVTDLPMELRESFENICERINREIKWKKRYRR--EDLGSRIN 186
           ++N   ++D +N +L+D+++     + +++ E+  +      K KKR +R  +   +++ 
Sbjct: 267 TLNENGHQDTQNEVLRDIVLEHPTAKAQDTGESNKDNNTSTSKHKKRPKRLSKFKQAKLE 326

Query: 185 LAEAAGMRSATSSATTLSGNNN 120
             ++     ATSS     GN +
Sbjct: 327 TKKSGNKDHATSSEKLSLGNES 348


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 5   FTIVLF*TLYLKKKGFYYTLSNFR 76
           F   L+  +Y+ K GFY T +N+R
Sbjct: 298 FRKFLYEKIYMNKDGFYITFNNYR 321


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = -3

Query: 398 KLKLNKGNFTKCESINSRVNKDIKNNLLKDVIVTDLPMELRESFENICERINREIKWKKR 219
           +L+L + NF + ES  S  N D++  LLK        ++ +E  +++ + I      K+ 
Sbjct: 641 QLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQ---TLKED 697

Query: 218 YRREDLGSRINLAEAAGMR 162
            R+ +   R +  EA  +R
Sbjct: 698 LRKSEEALRFSKLEAKNLR 716


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
 Frame = -3

Query: 473 AGIYSSLWVFKKAHSGDLSKFFAKIKLKLNKGNFTKCESINSRVNKDIKNNL----LKDV 306
           AG+   ++VF  AH+G + ++  K K  L    F+   +I SR +  + + L     K +
Sbjct: 61  AGV-QEVYVFCCAHAGQIREYIEKSKWNLPSSPFS-VNTIVSRESLSVGDALRELDSKQL 118

Query: 305 IVTDLPMELRESFENICERINREIKWKKRYRRED 204
           I +D  +   +   N+   +N  +K + R RRED
Sbjct: 119 ITSDFILVSGDVVSNV--PLNEVLK-EHRKRRED 149


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 425 DLSKFFAKIKLKLNKGNFTKCESINSRV--NKDIKNNLL 315
           + +KF  K+K++L  G+  + E I  R+  NKD  N +L
Sbjct: 453 EFAKFCPKLKIELYYGSQVEREEIRERINSNKDSYNVML 491


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 80  CIESLIKYNKILFFLNIKSKI 18
           C+ S ++YNKILF  +++ ++
Sbjct: 609 CLLSFLEYNKILFTPDVRKRV 629


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = -3

Query: 431 SGDLSKFFAKIKLKLNKGNFTKCESINSRVNKDIKNNLLKDVIVTDLPMELRESFENICE 252
           S D  K  A   +KL  G++      ++ ++ D   N  +D+ V D+P+      +    
Sbjct: 56  SNDSKKSSASFYMKLKYGSYRALA--DNILSTD--ENRKEDIAVFDVPLPNGLQIDTFTL 111

Query: 251 RINREIKWKKR 219
            + R+ KWKK+
Sbjct: 112 CLYRKSKWKKQ 122


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = -3

Query: 281 LRESFENICERINREIKWKKRYRREDLGSRINLAEAAGMRSATSSATTLSGNNNR 117
           +  +  N+ ER    ++  +RY+ +++   ++    A + S+TSS+T  S  +N+
Sbjct: 1   MENNSHNVDERRAARMRGAERYKIQNVEFSLDQNLLANLESSTSSSTRSSPASNQ 55


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 431 SGDLSKFFAKIKLKLNKGNFTKCESIN 351
           S   S+F +K+   LN GN T   S N
Sbjct: 462 SSSASRFMSKVSSNLNSGNPTPYNSYN 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,762
Number of Sequences: 5004
Number of extensions: 35106
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)