Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C09
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    29   0.70 
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   2.8  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   6.5  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   6.5  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   8.6  

>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +1

Query: 106 YRKANSNRMGRKFDSTMXRRXTLSETIGQRTPICMKKKXTRIXHDLMKLSL---AMCSVQ 276
           Y+    ++  ++F +T+ RR  L +T  +   +C K+    I  DL+  SL   A   +Q
Sbjct: 206 YKVTTVHKSYQRF-ATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTCFASDILQ 264

Query: 277 HLNHSTSTPSCPVRLTFT 330
            +   TS+ S PV L  T
Sbjct: 265 TVPEYTSSQSSPVLLPAT 282


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 419 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 282
           I  Q  L+ +  TH NPV    EC +S+C L   K  G E  L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 243 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 347
           Y  +ARH L    + FD HTF  +   FY T  RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 121 SNRMGRKFDSTMXRRXTLSETIGQRTPICMKKKXTRIXHDLMKLSLAM-CSVQHLNHSTS 297
           +NRM +  D+ + R     ET+G  T IC  K  T   + +  ++      V   +H+  
Sbjct: 517 TNRMQK--DNNLVRHLQACETMGTATNICSDKTGTLTQNRMTVVAGGFGTDVLFFDHNDE 574

Query: 298 TPS 306
           TP+
Sbjct: 575 TPT 577


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 277 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYITGLWVTLT 393
           HL  S STPS    LTF  T  +  T H       LW  L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,211
Number of Sequences: 5004
Number of extensions: 44577
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)