Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_C09
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 4.6
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 4.6
Z37139-1|CAA85491.1| 485|Caenorhabditis elegans Hypothetical pr... 28 6.0
U95074-1|AAB94647.1| 485|Caenorhabditis elegans protein disulph... 28 6.0
AL132948-28|CAD31828.1| 263|Caenorhabditis elegans Hypothetical... 27 8.0
AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear horm... 27 8.0
AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical... 27 8.0
AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical... 27 8.0
AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical... 27 8.0
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 283 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 408
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 283 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 408
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>Z37139-1|CAA85491.1| 485|Caenorhabditis elegans Hypothetical
protein C14B1.1 protein.
Length = 485
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 224 VNFFFIQIGVLXPIVSDKVNRLXIVESNF 138
V+F F+ + + +V+D N L + ESNF
Sbjct: 5 VSFIFLLVASIGAVVADSENVLVLTESNF 33
>U95074-1|AAB94647.1| 485|Caenorhabditis elegans protein disulphide
isomerase isoformI protein.
Length = 485
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 224 VNFFFIQIGVLXPIVSDKVNRLXIVESNF 138
V+F F+ + + +V+D N L + ESNF
Sbjct: 5 VSFIFLLVASIGAVVADSENVLVLTESNF 33
>AL132948-28|CAD31828.1| 263|Caenorhabditis elegans Hypothetical
protein Y39B6A.36 protein.
Length = 263
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 201 DLYEEEVXKDXSRSYEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRDPAFY 359
D+ + + KD +++Y + GA K F+KH+F L Q L+ P Y
Sbjct: 176 DMIKSKQKKDGAKTYRADRDVLRGALFKAFEKHSFY--RLQDLQQLLQQPVSY 226
>AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 260 protein.
Length = 398
Score = 27.5 bits (58), Expect = 8.0
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Frame = -1
Query: 482 D*FLNDNIIDLNADEMKFLLRIRLQVMLECVNVTHNPVI*L----IECRVSKCGLVKV-- 321
D F N+ ++N + MK ++ + E +N P L +EC K L+
Sbjct: 256 DYFFGLNVTNVNMESMKLKTQLHHNFVTEMINCLGTPFRRLQIDDVECAALKIILLLTPS 315
Query: 320 --KRT---GHEGVLVEWFRCCTEHM 261
KR G EGVL + CTE +
Sbjct: 316 CTKRAIYAGQEGVLAGLYTKCTEEL 340
>AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7c protein.
Length = 187
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 208 MKKKXTRIXHDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 357
++K R+ D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150
>AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7b protein.
Length = 214
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 208 MKKKXTRIXHDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 357
++K R+ D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177
>AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7a protein.
Length = 271
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 208 MKKKXTRIXHDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 357
++K R+ D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,005,106
Number of Sequences: 27780
Number of extensions: 251028
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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