Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C08
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 273 PWSESWTAGWLCDSTGMMVTP 211
           PW  S   GWLC  + M+  P
Sbjct: 525 PWW-SHVLGWLCGLSSMLCIP 544


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 273 PWSESWTAGWLCDSTGMMVTP 211
           PW  S   GWLC  + M+  P
Sbjct: 578 PWW-SHVLGWLCGLSSMLCIP 597


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 363 IDSVAEPPPALAFTTSVPASCIL 295
           + +   PP A+++  +VP   IL
Sbjct: 92  LKNAGTPPEAVSYNVAVPTKSIL 114


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 363 IDSVAEPPPALAFTTSVPASCIL 295
           + +   PP A+++  +VP   IL
Sbjct: 92  LKNAGTPPEAVSYNVAVPTKSIL 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.134    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,196
Number of Sequences: 438
Number of extensions: 1300
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)