Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_C05
(403 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 34 0.007
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 0.82
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 25 3.3
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 3.3
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 25 3.3
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 4.4
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 25 5.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 5.8
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 5.8
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 24 7.7
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 34.3 bits (75), Expect = 0.007
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -1
Query: 274 PDSEESPSRGL-PPSLRAWHPLRENGPVQDELGRETRPRESGTSRTPHLPPQ*ERRDSVL 98
P S +S S P S RA P R+N P E R S + LPP ERR L
Sbjct: 159 PQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSEPRTFSSFEDQYGRLPPGWERRTDNL 218
Query: 97 G 95
G
Sbjct: 219 G 219
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 27.5 bits (58), Expect = 0.82
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -1
Query: 274 PDSEESPSRGLPPSL--RAWHPLRENGPVQDELGRETRPRESGTSRTPHLPP 125
P E+ S GL S R+ P PV++ R+ R SG + T LPP
Sbjct: 130 PAVNETSSSGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASLPP 181
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 25.4 bits (53), Expect = 3.3
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -3
Query: 233 ATGLAPSTGKRPRSRRTWTGDETARKRNLPNTTSP-AAIGTAGFSA 99
A G+AP T K P R + T LP T +A G G +A
Sbjct: 40 AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEVSAYGPEGAAA 85
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 3.3
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 181 GRETRPRESGTSRTPHLPPQ*ERRD--SVLGYIPVRSPLLRKSW 56
G PRE G S +LPPQ RRD S IP S + +SW
Sbjct: 151 GAPLLPRE-GNSSDEYLPPQSSRRDVSSEKPSIPSISFINIRSW 193
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 3.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 289 CTLKQPDSEESPSRGLPPSLRAWHPLRENGPVQDELG 179
C +QP+++ + G S+R WH + G +E G
Sbjct: 181 CITRQPNTDIFWTCGSESSIRCWHITKVGGSQLEEEG 217
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 4.4
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Frame = -1
Query: 280 KQPDSEESP---SRGLPPSLRAWHPLRENGPVQDELGRETRPRESGTSRTPHLPPQ*ERR 110
K P S +P + P+ HP ++ GP+ D + P+ G P
Sbjct: 278 KTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIPSSPKTEGAPSNAQFRPSLPAT 337
Query: 109 DSVLGYIPVRSPL 71
+ G +P +PL
Sbjct: 338 PN--GSVPQSNPL 348
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 24.6 bits (51), Expect = 5.8
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -3
Query: 344 YRSRGNI*P*MEFTTHLGLHSQATRL*GESLSRPASVATGLAPSTGKRPRSRRTWTGDET 165
Y SRGN ++ TT G+H P+ +TG+ + R + W G
Sbjct: 12 YDSRGNPTVEVDLTTETGIHRAIV---------PSGASTGIWEALEMRDGDKTKWGGKGV 62
Query: 164 ARK-RNLPNTTSPAAI 120
+ N+ N +PA +
Sbjct: 63 LKAVGNVNNIIAPAVV 78
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 24.6 bits (51), Expect = 5.8
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -3
Query: 254 LSRPASVATGLAPSTGKRPRSRRTWTGDETARKRNLPNTTSPAAI 120
+SRP++ G++ + K+ + R + + K+N+ TT A+
Sbjct: 199 VSRPSTDTIGVSSALSKKKKKRNRKNQKKKSTKQNIEATTENDAL 243
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 24.6 bits (51), Expect = 5.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 168 DREKAEPPEHHISRRNRNGGIQCWA 94
+R++ + H S+ NRN Q WA
Sbjct: 128 ERDERDAAAAHTSKANRNSARQMWA 152
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 7.7
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -3
Query: 263 GESLSRPASVATGLAPSTGKRPRSRRTWTGDETARKRNLPNTTSPAAIGTAGFSAG 96
G + S+PA+ TG AP+TG + TA + TT+ ++ GT GFS G
Sbjct: 251 GTNDSKPAASNTGSAPTTG-FSFGKPAGQAASTATDK---GTTTTSSAGT-GFSFG 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,644
Number of Sequences: 5004
Number of extensions: 34073
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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