Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C05
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.43 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   0.99 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   0.99 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   0.99 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = -3

Query: 239  SVATGLAPSTGKRPRSR-RTWTGDETARKRNLPNT----TSPAA 123
            S+A      +   PRS  R W GD   R+R +P +     SPAA
Sbjct: 900  SLAVDTVARSNVTPRSPGRAWPGDSDIRQRPIPRSDDIRLSPAA 943


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 213 YGKTAPFKTNLDGRRDREKAEPPEHHI 133
           + K    +  ++GR D E A  P+H I
Sbjct: 361 HSKGGTLENTINGRADEEAAPAPQHLI 387


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 213 YGKTAPFKTNLDGRRDREKAEPPEHHI 133
           + K    +  ++GR D E A  P+H I
Sbjct: 361 HSKGGTLENTINGRADEEAAPAPQHLI 387


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 213 YGKTAPFKTNLDGRRDREKAEPPEHHI 133
           + K    +  ++GR D E A  P+H I
Sbjct: 299 HSKGGTLENTINGRADEEAAPAPQHLI 325


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 89  NIAQH*IPPFLLRREMWCS 145
           ++A+H +  FL R ++W S
Sbjct: 372 HLARHAVACFLTRGDLWIS 390


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 263 GESLSRPASVATGLAPST 210
           G + + PA+ ATG  P+T
Sbjct: 223 GATTTLPAASATGTGPAT 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,132
Number of Sequences: 438
Number of extensions: 2748
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)