Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C04
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0315 + 20803035-20803154,20803235-20804089,20804171-208043...    28   5.9  

>01_05_0315 +
           20803035-20803154,20803235-20804089,20804171-20804350,
           20805191-20805286,20805895-20806179
          Length = 511

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = -3

Query: 408 IKLLAV*NSKFRDRFIYCVLAKLGTCMLRFIINILNLIS*DWVLYKTSRIPAAAPALQYF 229
           I+L A   + F  R  + V+  L  C+     +I + I  D + Y  + +P   P ++  
Sbjct: 258 IELHAPKLTTFEYRGCFKVIIALHKCLKLKTASIASHIE-DNLEYVFTGLPNGLPHVERL 316

Query: 228 HAFVFIRNCNFLFSTQI 178
           H  VF+R  NFL   QI
Sbjct: 317 HVKVFVRTQNFLGVFQI 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,281,719
Number of Sequences: 37544
Number of extensions: 179371
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)