Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C03
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0342 - 3016705-3016884,3016963-3017031,3017322-3017408,301...    29   3.3  
02_02_0582 - 11798252-11798908                                         28   5.8  

>08_01_0342 -
           3016705-3016884,3016963-3017031,3017322-3017408,
           3017603-3017650,3017783-3017873,3018243-3018322,
           3018429-3018533,3019457-3019551,3019710-3019788,
           3020214-3020402
          Length = 340

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 368 RLALLYHSFYIFIRLCVQRVTVGCFSVLPITILKLYLLY 484
           R ALL+  F + + +    +  GCF VLP+ + + +LL+
Sbjct: 123 RTALLFLGFPMILLVLRSWLWNGCFPVLPVQLYQAWLLF 161


>02_02_0582 - 11798252-11798908
          Length = 218

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 407 RLCVQRVTVGCFSVLPITILKLYLLYK-TMSDCKSCGIR 520
           RL +  + + CFS+LP+   +L L  K T++D K+  I+
Sbjct: 8   RLAISVILLCCFSLLPLAHARLLLSDKNTLNDSKAFSIK 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,136,623
Number of Sequences: 37544
Number of extensions: 190810
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)