Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C03
         (556 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ406937-1|CAC27576.1|  186|Homo sapiens keratin associated prot...    26   4.0  
BC133677-1|AAI33678.1|  194|Homo sapiens KRTAP10-3 protein protein.    30   6.3  
BC133023-1|AAI33024.1| 1146|Homo sapiens DENND3 protein protein.       30   6.3  

>AJ406937-1|CAC27576.1|  186|Homo sapiens keratin associated protein
           4.5 protein.
          Length = 186

 Score = 26.2 bits (55), Expect(2) = 4.0
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = -1

Query: 169 RLPACLPRMN*GRNLRQDIRNDGCFQNQCCHPSYC 65
           R   C P        R       C Q  CC PSYC
Sbjct: 97  RTTCCCPSCCVSSCCRPQCCQSVCCQPTCCRPSYC 131



 Score = 23.0 bits (47), Expect(2) = 4.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 91  NQCCHPSYCSLS 56
           + CCHPS C  S
Sbjct: 133 SSCCHPSCCESS 144


>BC133677-1|AAI33678.1|  194|Homo sapiens KRTAP10-3 protein protein.
          Length = 194

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 106 DGCFQNQCCHPSYCSLSP--TAVATPTTARS 20
           + C +  CC PS C+L+P  T V TP +  S
Sbjct: 24  ESCCEPPCCAPSCCALAPCLTLVCTPVSCVS 54


>BC133023-1|AAI33024.1| 1146|Homo sapiens DENND3 protein protein.
          Length = 1146

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 386 HSFYIFIRLCVQRVTVGCFSVLPITILKLYLLYKTMSDCKSC 511
           H  Y F      R   GCF    + ++  +  Y ++ DC SC
Sbjct: 87  HDEYCFYNGKTHRECPGCFVPFAVCVVSRFPYYNSLKDCLSC 128


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,030,875
Number of Sequences: 237096
Number of extensions: 1151436
Number of successful extensions: 2191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)