Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C03
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   4.8  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   6.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.4  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 431 VGCFSVLPITILKLYLL 481
           VG FSVL I I  +Y+L
Sbjct: 85  VGVFSVLTILISYIYIL 101


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 387 TVFTFLSVCVCKGSLS 434
           T+    ++C+C G+LS
Sbjct: 3   TILIISAICICVGALS 18


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 442 FGITDYYIKTILII 483
           F + DYYI +ILI+
Sbjct: 233 FFMMDYYIPSILIV 246


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 448 YRKTPDSDPLHTQTDKNV 395
           Y KTP+ + L   TDK +
Sbjct: 237 YVKTPNDEELEKPTDKRM 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,943
Number of Sequences: 438
Number of extensions: 2480
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)